RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 CHD1LQ86WJ1 897 aa9.53□□□□□ -0.88
HMGB1P39-201ENST00000366304 SMC5Q8IY18 1101 aa9.53□□□□□ -0.88
HMGB1P39-201ENST00000366304 MCRS1Q96EZ8 462 aa9.53□□□□□ -0.88
HMGB1P39-201ENST00000366304 NIFKQ9BYG3 293 aaKnown RBP9.53□□□□□ -0.88
HMGB1P39-201ENST00000366304 LMAN1LQ9HAT1 526 aa9.53□□□□□ -0.88
HMGB1P39-201ENST00000366304 DISC1Q9NRI5 854 aa9.53□□□□□ -0.88
HMGB1P39-201ENST00000366304 DPP7Q9UHL4 492 aa9.53□□□□□ -0.88
HMGB1P39-201ENST00000366304 SSX2IPQ9Y2D8 614 aa9.53□□□□□ -0.88
HMGB1P39-201ENST00000366304 SAMM50Q9Y512 469 aa9.53□□□□□ -0.88
HMGB1P39-201ENST00000366304 IPPQ9Y573 584 aa9.53□□□□□ -0.88
HMGB1P39-201ENST00000366304 V9GY48 417 aaPredicted RBP9.53□□□□□ -0.88
HMGB1P39-201ENST00000366304 MAST4O15021 2626 aa9.53□□□□□ -0.88
HMGB1P39-201ENST00000366304 CNTNAP2Q9UHC6 1331 aa9.53□□□□□ -0.88
HMGB1P39-201ENST00000366304 HELZ2Q9BYK8 2649 aaKnown RBP9.52□□□□□ -0.88
HMGB1P39-201ENST00000366304 WDR64B1ANS9 1081 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 MSH4O15457 936 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 ECI2O75521 394 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 IGHDP01880 384 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 C8AP07357 584 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 HNRNPA1P09651 372 aaKnown RBP eCLIP9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 CHRNB1P11230 501 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 CEBPBP17676 345 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 NUCB1Q02818 461 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 GRM2Q14416 872 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 STPG1Q5TH74 334 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 PLA2G4FQ68DD2 849 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 HEATR6Q6AI08 1181 aaKnown RBP9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 IL31Q6EBC2 164 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 PPP1R18Q6NYC8 613 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 ELMSAN1Q6PJG2 1045 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 ANO5Q75V66 913 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 MICU3Q86XE3 530 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 CXCL16Q9H2A7 254 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 RBM12Q9NTZ6 932 aaKnown RBP9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 BARHL2Q9NY43 387 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 KANSL3Q9P2N6 904 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 POLIQ9UNA4 740 aa9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 MTCL1Q9Y4B5 1905 aaKnown RBP9.52□□□□□ -0.89
HMGB1P39-201ENST00000366304 RCCD1A6NED2 376 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 CCDC69A6NI79 296 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 SOBPA7XYQ1 873 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 AXIN1O15169 862 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 NCAM2O15394 837 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 MAFO75444 373 aaPredicted RBP9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 NRLP54845 237 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 USP41Q3LFD5 358 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 PPM1LQ5SGD2 360 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 PSAPL1Q6NUJ1 521 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 Q6ZS52 159 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 GPR65Q8IYL9 337 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 LNX1Q8TBB1 728 aaPredicted RBP9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 SLC7A14Q8TBB6 771 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 HASPINQ8TF76 798 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 DDX1Q92499 740 aaKnown RBP9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 GATA6Q92908 595 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 SLC5A5Q92911 643 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 LSM14BQ9BX40 385 aaKnown RBP9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 ARRDC1-AS1Q9H2J1 176 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 NXF3Q9H4D5 531 aaKnown RBP9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 ADAM28Q9UKQ2 775 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 MYH9P35579 1960 aaKnown RBP9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 LOC400499M0QZD8 3231 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 LAMA5O15230 3695 aa9.51□□□□□ -0.89
HMGB1P39-201ENST00000366304 WDR81Q562E7 1941 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 SRGAP2CP0DJJ0 459 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 CALM1P0DP23 149 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 CALM2P0DP24 149 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 CALM3P0DP25 149 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 ITGA4P13612 1032 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 CHMLP26374 656 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 HOXA9P31269 272 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 CIITAP33076 1130 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 CCR2P41597 374 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 LIFRP42702 1097 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 CXCL12P48061 93 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 CCR3P51677 355 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 NPEPPSP55786 919 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 AASDHQ4L235 1098 aaPredicted RBP9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 PABPC1LQ4VXU2 614 aaKnown RBP9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 FAM78AQ5JUQ0 283 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 AXDND1Q5T1B0 1012 aaPredicted RBP9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 TCEAL6Q6IPX3 200 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 CASC1Q6TDU7 716 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 B3GNT9Q6UX72 402 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 MAP4K3Q8IVH8 894 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 EXOC6Q8TAG9 804 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 PRPF31Q8WWY3 499 aaKnown RBP9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 TCEAL3Q969E4 200 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 TMEM143Q96AN5 459 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 TCEAL4Q96EI5 215 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 CPB2Q96IY4 423 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 ZSWIM3Q96MP5 696 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 COLEC11Q9BWP8 271 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 APOL6Q9BWW8 343 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 WRAP73Q9P2S5 460 aaPredicted RBP9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 BRPF3Q9ULD4 1205 aa9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 RBM8AQ9Y5S9 174 aaKnown RBP9.5□□□□□ -0.89
HMGB1P39-201ENST00000366304 SLC12A7Q9Y666 1083 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms