RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 ENOX2Q16206 610 aaKnown RBP20.21■□□□□ 0.83
CLN3-204ENST00000357857 DCAF4L1Q3SXM0 396 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 ZACNQ401N2 412 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 SLC9C1Q4G0N8 1177 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 NOTUMQ6P988 496 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 CCAR2Q8N163 923 aaKnown RBP20.21■□□□□ 0.83
CLN3-204ENST00000357857 TAS1R2Q8TE23 839 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 SEMA4DQ92854 862 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 WNT8BQ93098 351 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 FAM212AQ96EL1 285 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 SPTLC3Q9NUV7 552 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 DNAJC12Q9UKB3 198 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 AJAP1Q9UKB5 411 aaPredicted RBP20.21■□□□□ 0.83
CLN3-204ENST00000357857 CDY2AQ9Y6F7 541 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 STAG3L1P0CL83 205 aa20.2■□□□□ 0.82
CLN3-204ENST00000357857 AP3M2P53677 418 aa20.2■□□□□ 0.82
CLN3-204ENST00000357857 JAM2P57087 298 aa20.2■□□□□ 0.82
CLN3-204ENST00000357857 POU5F1Q01860 360 aaKnown RBP20.2■□□□□ 0.82
CLN3-204ENST00000357857 PHLDB3Q6NSJ2 640 aa20.2■□□□□ 0.82
CLN3-204ENST00000357857 TOGARAM2Q6ZUX3 1019 aa20.2■□□□□ 0.82
CLN3-204ENST00000357857 WDR49Q8IV35 697 aa20.2■□□□□ 0.82
CLN3-204ENST00000357857 FAM84AQ96KN4 292 aa20.2■□□□□ 0.82
CLN3-204ENST00000357857 RAB20Q9NX57 234 aa20.2■□□□□ 0.82
CLN3-204ENST00000357857 CENPFP49454 3210 aa20.2■□□□□ 0.82
CLN3-204ENST00000357857 A0A1W2PQ45 241 aaPredicted RBP20.19■□□□□ 0.82
CLN3-204ENST00000357857 A0A1W2PQY0 241 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 KBTBD13C9JR72 458 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 LRRN2O75325 713 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 IL18RAPO95256 599 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 BIRC3Q13489 604 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 TDRD10Q5VZ19 366 aaKnown RBP20.19■□□□□ 0.82
CLN3-204ENST00000357857 SLC27A1Q6PCB7 646 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 TMEM192Q8IY95 271 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 STK33Q9BYT3 514 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 AIPL1Q9NZN9 384 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 RALGAPA2Q2PPJ7 1873 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 CCP110O43303 1012 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 NPTXRO95502 500 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 CXCL8P10145 99 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 PTK7Q13308 1070 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 ASIC2Q16515 512 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 NHEJ1Q9H9Q4 299 aaPredicted RBP20.19■□□□□ 0.82
CLN3-204ENST00000357857 PAK6Q9NQU5 681 aaPredicted RBP20.19■□□□□ 0.82
CLN3-204ENST00000357857 STARD7Q9NQZ5 370 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 TRMT1Q9NXH9 659 aaKnown RBP20.19■□□□□ 0.82
CLN3-204ENST00000357857 PHF24Q9UPV7 400 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 NOD1Q9Y239 953 aa20.19■□□□□ 0.82
CLN3-204ENST00000357857 USP27XA6NNY8 438 aa20.18■□□□□ 0.82
CLN3-204ENST00000357857 B4GALT4O60513 344 aa20.18■□□□□ 0.82
CLN3-204ENST00000357857 HLA-DRAP01903 254 aa20.18■□□□□ 0.82
CLN3-204ENST00000357857 CTSHP09668 335 aa20.18■□□□□ 0.82
CLN3-204ENST00000357857 PIK3CAP42336 1068 aa20.18■□□□□ 0.82
CLN3-204ENST00000357857 GPIHBP1Q8IV16 184 aa20.18■□□□□ 0.82
CLN3-204ENST00000357857 ARHGEF19Q8IW93 802 aa20.18■□□□□ 0.82
CLN3-204ENST00000357857 CCDC170Q8IYT3 715 aa20.18■□□□□ 0.82
CLN3-204ENST00000357857 OR5B17Q8NGF7 314 aa20.18■□□□□ 0.82
CLN3-204ENST00000357857 NT5C1BQ96P26 610 aa20.18■□□□□ 0.82
CLN3-204ENST00000357857 DESI2Q9BSY9 194 aa20.18■□□□□ 0.82
CLN3-204ENST00000357857 SENP6Q9GZR1 1112 aaPredicted RBP20.18■□□□□ 0.82
CLN3-204ENST00000357857 UBE2TQ9NPD8 197 aaPredicted RBP20.18■□□□□ 0.82
CLN3-204ENST00000357857 TRMT13Q9NUP7 481 aaKnown RBP20.18■□□□□ 0.82
CLN3-204ENST00000357857 ARHGAP20Q9P2F6 1191 aa20.18■□□□□ 0.82
CLN3-204ENST00000357857 PIN4Q9Y237 131 aaKnown RBP20.18■□□□□ 0.82
CLN3-204ENST00000357857 PPP2R2CQ9Y2T4 447 aa20.18■□□□□ 0.82
CLN3-204ENST00000357857 EPN1Q9Y6I3 576 aaPredicted RBP20.18■□□□□ 0.82
CLN3-204ENST00000357857 TRIP11Q15643 1979 aa20.17■□□□□ 0.82
CLN3-204ENST00000357857 A0A0U1RQG5 324 aaPredicted RBP20.17■□□□□ 0.82
CLN3-204ENST00000357857 ZSCAN12O43309 604 aa20.17■□□□□ 0.82
CLN3-204ENST00000357857 ZC3H11AO75152 810 aaKnown RBP eCLIP20.17■□□□□ 0.82
CLN3-204ENST00000357857 SERPING1P05155 500 aa20.17■□□□□ 0.82
CLN3-204ENST00000357857 CYLC1P35663 651 aaPredicted RBP20.17■□□□□ 0.82
CLN3-204ENST00000357857 THPOP40225 353 aa20.17■□□□□ 0.82
CLN3-204ENST00000357857 GRM5P41594 1212 aa20.17■□□□□ 0.82
CLN3-204ENST00000357857 STAT1P42224 750 aa20.17■□□□□ 0.82
CLN3-204ENST00000357857 MGAT3Q09327 533 aa20.17■□□□□ 0.82
CLN3-204ENST00000357857 DRAP1Q14919 205 aaPredicted RBP20.17■□□□□ 0.82
CLN3-204ENST00000357857 MTFR1Q15390 333 aa20.17■□□□□ 0.82
CLN3-204ENST00000357857 DUOXA2Q1HG44 320 aa20.17■□□□□ 0.82
CLN3-204ENST00000357857 FAM228AQ86W67 206 aa20.17■□□□□ 0.82
CLN3-204ENST00000357857 ACAP3Q96P50 834 aa20.17■□□□□ 0.82
CLN3-204ENST00000357857 NOC2LQ9Y3T9 749 aaKnown RBP20.17■□□□□ 0.82
CLN3-204ENST00000357857 MROH7Q68CQ1 1323 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 F8VZ95 297 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 PHACTR2O75167 634 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 NDUFA10O95299 355 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 VNN1O95497 513 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 MYCP01106 439 aaPredicted RBP20.16■□□□□ 0.82
CLN3-204ENST00000357857 CHRNA1P02708 482 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 PLEKP08567 350 aaPredicted RBP20.16■□□□□ 0.82
CLN3-204ENST00000357857 CCDC175P0C221 793 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 CCL5P13501 91 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 ARHGAP44Q17R89 818 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 TDRD12Q587J7 1177 aaKnown RBP20.16■□□□□ 0.82
CLN3-204ENST00000357857 HGSNATQ68CP4 663 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 SLC43A3Q8NBI5 491 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 PPP1R13BQ96KQ4 1090 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 DEFB118Q96PH6 123 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 CCDC94Q9BW85 323 aaPredicted RBP20.16■□□□□ 0.82
CLN3-204ENST00000357857 EIF2AQ9BY44 585 aaKnown RBP20.16■□□□□ 0.82
CLN3-204ENST00000357857 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.16■□□□□ 0.826e-9■■■■■ 134.6
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms