RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 HEXIM2Q96MH2 286 aaKnown RBP9.9□□□□□ -0.82
UPF2-202ENST00000357604 ACO2Q99798 780 aaKnown RBP9.9□□□□□ -0.82
UPF2-202ENST00000357604 DDX50Q9BQ39 737 aaKnown RBP9.9□□□□□ -0.82
UPF2-202ENST00000357604 AGAP1Q9UPQ3 857 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 MYO5AQ9Y4I1 1855 aaKnown RBP9.9□□□□□ -0.82
UPF2-202ENST00000357604 IGKV6D-21A0A0A0MT36 114 aa9.9□□□□□ -0.83
UPF2-202ENST00000357604 MAPK13O15264 365 aa9.9□□□□□ -0.83
UPF2-202ENST00000357604 ADH1AP07327 375 aa9.9□□□□□ -0.83
UPF2-202ENST00000357604 EPHB3P54753 998 aa9.9□□□□□ -0.83
UPF2-202ENST00000357604 RPL10AP62906 217 aaKnown RBP9.9□□□□□ -0.83
UPF2-202ENST00000357604 SMARCB1Q12824 385 aa9.9□□□□□ -0.83
UPF2-202ENST00000357604 FAM187BQ17R55 369 aa9.9□□□□□ -0.83
UPF2-202ENST00000357604 CES5AQ6NT32 575 aa9.9□□□□□ -0.83
UPF2-202ENST00000357604 NUDT18Q6ZVK8 323 aa9.9□□□□□ -0.83
UPF2-202ENST00000357604 GRAMD1CQ8IYS0 662 aa9.9□□□□□ -0.83
UPF2-202ENST00000357604 STKLD1Q8NE28 680 aa9.9□□□□□ -0.83
UPF2-202ENST00000357604 LMAN2LQ9H0V9 348 aa9.9□□□□□ -0.83
UPF2-202ENST00000357604 IFT122Q9HBG6 1241 aa9.9□□□□□ -0.83
UPF2-202ENST00000357604 KBTBD4Q9NVX7 518 aa9.9□□□□□ -0.83
UPF2-202ENST00000357604 NOC2LQ9Y3T9 749 aaKnown RBP9.9□□□□□ -0.83
UPF2-202ENST00000357604 RALAP11233 206 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.89□□□□□ -0.83
UPF2-202ENST00000357604 GOLPH3LQ9H4A5 285 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 AGPAT5Q9NUQ2 364 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 TMEM51Q9NW97 253 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 NXF1Q9UBU9 619 aaKnown RBP9.89□□□□□ -0.83
UPF2-202ENST00000357604 PODXLO00592 558 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 IKBKBO14920 756 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 SPATA31C1P0DKV0 1188 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 ZNF200P98182 395 aaPredicted RBP9.89□□□□□ -0.83
UPF2-202ENST00000357604 ANKS3Q6ZW76 656 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 RPAINQ86UA6 219 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 CNGA4Q8IV77 575 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 SH2D3AQ9BRG2 576 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 RGS18Q9NS28 235 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 IPPQ9Y573 584 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 A0A087WWV3 80 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 FAM26DQ5JW98 314 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 SFMBT2Q5VUG0 894 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 C4orf32Q8N8J7 132 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 SCLYQ96I15 445 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 POLIQ9UNA4 740 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 NFE2L3Q9Y4A8 694 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 NKX3-2P78367 333 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 GTF2BQ00403 316 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 ARID5AQ03989 594 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 MBTD1Q05BQ5 628 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 PLVAPQ9BX97 442 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 LRRC4Q9HBW1 653 aa9.89□□□□□ -0.83
UPF2-202ENST00000357604 HAS3O00219 553 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 SART1O43290 800 aaKnown RBP9.88□□□□□ -0.83
UPF2-202ENST00000357604 HOXD8P13378 290 aaPredicted RBP9.88□□□□□ -0.83
UPF2-202ENST00000357604 CTXN3Q4LDR2 81 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 CYP4A22Q5TCH4 519 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 FAM126BQ8IXS8 530 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 PPM1KQ8N3J5 372 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 ZNF507Q8TCN5 953 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 TMEM8AQ9HCN3 771 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 PDLIM7Q9NR12 457 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 UXTQ9UBK9 157 aaPredicted RBP9.88□□□□□ -0.83
UPF2-202ENST00000357604 PCDHA11Q9Y5I1 949 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 BZW2Q9Y6E2 419 aaKnown RBP9.88□□□□□ -0.83
UPF2-202ENST00000357604 PLXNB2O15031 1838 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 CAPN9O14815 690 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 TSPAN1O60635 241 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 CSPG5O95196 566 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 FERP16591 822 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 PPM1LQ5SGD2 360 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 DIS3LQ8TF46 1054 aaKnown RBP9.88□□□□□ -0.83
UPF2-202ENST00000357604 TIFAQ96CG3 184 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 CDK5RAP1Q96SZ6 601 aaKnown RBP9.88□□□□□ -0.83
UPF2-202ENST00000357604 PRG3Q9Y2Y8 225 aaPredicted RBP9.88□□□□□ -0.83
UPF2-202ENST00000357604 LUC7L2Q9Y383 392 aaKnown RBP9.88□□□□□ -0.83
UPF2-202ENST00000357604 A8MXQ7 604 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 RB1P06400 928 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 ENOX1Q8TC92 643 aaKnown RBP9.88□□□□□ -0.83
UPF2-202ENST00000357604 LENG9Q96B70 501 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 NCAPGQ9BPX3 1015 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 BPIFA3Q9BQP9 254 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 KLK14Q9P0G3 267 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 THAP12O43422 761 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 UBE3AQ05086 875 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 LRMPQ12912 555 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 GPM6BQ13491 265 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 ALS2CR12Q96Q35 445 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.88□□□□□ -0.831e-10■■■■■ 93.8
UPF2-202ENST00000357604 GCNT4Q9P109 453 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 MYO6Q9UM54 1294 aa9.88□□□□□ -0.83
UPF2-202ENST00000357604 FGFR4P22455 802 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 CTGFP29279 349 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 LPIN1Q14693 890 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 CC2D1AQ6P1N0 951 aaPredicted RBP9.87□□□□□ -0.83
UPF2-202ENST00000357604 TDHQ8IZJ6 230 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 EHBP1Q8NDI1 1231 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 FBXL13Q8NEE6 735 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 CCDC112Q8NEF3 446 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 KIFC3Q9BVG8 833 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 TAB2Q9NYJ8 693 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 ENPEPQ07075 957 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 LHX8Q68G74 356 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms