RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ADAM7Q9H2U9 754 aa20.15■□□□□ 0.82
CLN3-202ENST00000355477 RXFP1Q9HBX9 757 aa20.15■□□□□ 0.82
CLN3-202ENST00000355477 C11orf16Q9NQ32 467 aa20.15■□□□□ 0.82
CLN3-202ENST00000355477 LARSQ9P2J5 1176 aaKnown RBP20.15■□□□□ 0.82
CLN3-202ENST00000355477 SMIM28A0A1B0GU29 152 aa20.14■□□□□ 0.81
CLN3-202ENST00000355477 TEX28O15482 410 aa20.14■□□□□ 0.81
CLN3-202ENST00000355477 MEFVO15553 781 aaPredicted RBP20.14■□□□□ 0.81
CLN3-202ENST00000355477 ZNF131P52739 623 aa20.14■□□□□ 0.81
CLN3-202ENST00000355477 USP41Q3LFD5 358 aa20.14■□□□□ 0.81
CLN3-202ENST00000355477 XKR4Q5GH76 650 aa20.14■□□□□ 0.81
CLN3-202ENST00000355477 FOXD4L5Q5VV16 416 aaPredicted RBP20.14■□□□□ 0.81
CLN3-202ENST00000355477 KIAA1841Q6NSI8 718 aa20.14■□□□□ 0.81
CLN3-202ENST00000355477 RNF135Q8IUD6 432 aa20.14■□□□□ 0.81
CLN3-202ENST00000355477 MYCT1Q8N699 235 aa20.14■□□□□ 0.81
CLN3-202ENST00000355477 FOXD4L4Q8WXT5 416 aaPredicted RBP20.14■□□□□ 0.81
CLN3-202ENST00000355477 CCDC94Q9BW85 323 aaPredicted RBP20.14■□□□□ 0.81
CLN3-202ENST00000355477 HAPLN2Q9GZV7 340 aa20.14■□□□□ 0.81
CLN3-202ENST00000355477 DZANK1Q9NVP4 752 aa20.14■□□□□ 0.81
CLN3-202ENST00000355477 SSX2IPQ9Y2D8 614 aa20.14■□□□□ 0.81
CLN3-202ENST00000355477 MORC2Q9Y6X9 1032 aaPredicted RBP20.14■□□□□ 0.81
CLN3-202ENST00000355477 FAM86C2PA6NEL3 165 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 TOM1L1O75674 476 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 FAM13AO94988 1023 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 KRT18P05783 430 aaKnown RBP20.13■□□□□ 0.81
CLN3-202ENST00000355477 HARSP12081 509 aaKnown RBP20.13■□□□□ 0.81
CLN3-202ENST00000355477 NASPP49321 788 aaPredicted RBP20.13■□□□□ 0.81
CLN3-202ENST00000355477 ITIH3Q06033 890 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 SEZ6Q53EL9 994 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 RTP2Q5QGT7 225 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 CES5AQ6NT32 575 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 ZPBP2Q6X784 338 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 RIN2Q8WYP3 895 aaPredicted RBP20.13■□□□□ 0.81
CLN3-202ENST00000355477 KCNN1Q92952 543 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 FBXL18Q96ME1 805 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 ZMAT2Q96NC0 199 aaKnown RBP20.13■□□□□ 0.81
CLN3-202ENST00000355477 ACAP3Q96P50 834 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 FIZ1Q96SL8 496 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 PARVGQ9HBI0 331 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 GOLGA2P5Q9HBQ8 144 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 ANKFY1Q9P2R3 1169 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 TFIP11Q9UBB9 837 aaKnown RBP20.13■□□□□ 0.81
CLN3-202ENST00000355477 MUTYHQ9UIF7 546 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 DOCK6Q96HP0 2047 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 DENND4AQ7Z401 1863 aa20.13■□□□□ 0.81
CLN3-202ENST00000355477 SF3B1O75533 1304 aaKnown RBP eCLIP20.12■□□□□ 0.813e-9■■■■■ 164.7
CLN3-202ENST00000355477 DCXO43602 365 aa20.12■□□□□ 0.81
CLN3-202ENST00000355477 ALADP13716 330 aa20.12■□□□□ 0.81
CLN3-202ENST00000355477 YARSP54577 528 aaKnown RBP20.12■□□□□ 0.81
CLN3-202ENST00000355477 SOX4Q06945 474 aaPredicted RBP20.12■□□□□ 0.81
CLN3-202ENST00000355477 RRAGBQ5VZM2 374 aa20.12■□□□□ 0.81
CLN3-202ENST00000355477 PRSS55Q6UWB4 352 aaPredicted RBP20.12■□□□□ 0.81
CLN3-202ENST00000355477 CD300LGQ6UXG3 332 aa20.12■□□□□ 0.81
CLN3-202ENST00000355477 KRI1Q8N9T8 703 aaKnown RBP20.12■□□□□ 0.81
CLN3-202ENST00000355477 SPRYD3Q8NCJ5 442 aa20.12■□□□□ 0.81
CLN3-202ENST00000355477 LINC00301Q8NCQ3 95 aa20.12■□□□□ 0.81
CLN3-202ENST00000355477 SNX27Q96L92 541 aa20.12■□□□□ 0.81
CLN3-202ENST00000355477 PANK2Q9BZ23 570 aa20.12■□□□□ 0.81
CLN3-202ENST00000355477 ZHX3Q9H4I2 956 aa20.12■□□□□ 0.81
CLN3-202ENST00000355477 POMKQ9H5K3 350 aa20.12■□□□□ 0.81
CLN3-202ENST00000355477 TOPORSQ9NS56 1045 aaPredicted RBP20.12■□□□□ 0.81
CLN3-202ENST00000355477 CCDC39Q9UFE4 941 aa20.12■□□□□ 0.81
CLN3-202ENST00000355477 TBX20Q9UMR3 447 aa20.12■□□□□ 0.81
CLN3-202ENST00000355477 TECTAO75443 2155 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 A0A087X0B3 334 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 H0YCG3 227 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 CLDN3O15551 220 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 TRAK2O60296 914 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 ADH1AP07327 375 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 SPATA31D3P0C874 917 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 MYBP10242 640 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 RPL17P18621 184 aaKnown RBP20.11■□□□□ 0.81
CLN3-202ENST00000355477 SP100P23497 879 aaPredicted RBP20.11■□□□□ 0.81
CLN3-202ENST00000355477 CLCNKBP51801 687 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 MCL1Q07820 350 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 NOLC1Q14978 699 aaKnown RBP eCLIP20.11■□□□□ 0.81
CLN3-202ENST00000355477 UPP1Q16831 310 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 FAM171A1Q5VUB5 890 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 TMC5Q6UXY8 1006 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 SPATA31D4Q6ZUB0 917 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 DYMQ7RTS9 669 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 PALB2Q86YC2 1186 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 GLYCTKQ8IVS8 523 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 LRFN3Q9BTN0 628 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 STK17AQ9UEE5 414 aa20.11■□□□□ 0.81
CLN3-202ENST00000355477 ANK1P16157 1881 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 K7ENM7 598 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 GPR37L1O60883 481 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 HSP90AA1P07900 732 aaKnown RBP20.1■□□□□ 0.81
CLN3-202ENST00000355477 KCNE1P15382 129 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 NMT1P30419 496 aaKnown RBP20.1■□□□□ 0.81
CLN3-202ENST00000355477 STK38Q15208 465 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 SLC10A6Q3KNW5 377 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 HERC4Q5GLZ8 1057 aaPredicted RBP20.1■□□□□ 0.81
CLN3-202ENST00000355477 TMEM31Q5JXX7 168 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 DCLRE1AQ6PJP8 1040 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 CEP57Q86XR8 500 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 GPR65Q8IYL9 337 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 C3orf58Q8NDZ4 430 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 BICD1Q96G01 975 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 TTPALQ9BTX7 342 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms