RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TOP1P11387 765 aaKnown RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 EEF2P13639 858 aaKnown RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 DPEP1P16444 411 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 LONP1P36776 959 aaKnown RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 SREBF1P36956 1147 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 CCNFP41002 786 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ZNF143P52747 638 aaPredicted RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 PPP2R2AP63151 447 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 FSTL1Q12841 308 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 PDIA5Q14554 519 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 SYCP1Q15431 976 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 NFIL3Q16649 462 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 PLEKHG4Q58EX7 1191 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 TTC38Q5R3I4 469 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 PPP1R3FQ6ZSY5 799 aaPredicted RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 CCDC186Q7Z3E2 898 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 DEFB132Q7Z7B7 95 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 THNSL2Q86YJ6 484 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 SLFN12Q8IYM2 578 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ZSWIM2Q8NEG5 633 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 IL31RAQ8NI17 732 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 CXorf38Q8TB03 319 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ACER1Q8TDN7 264 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 TBC1D22AQ8WUA7 517 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 FBLIM1Q8WUP2 373 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 HPS3Q969F9 1004 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 FERMT2Q96AC1 680 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 SCLYQ96I15 445 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 HAPLN2Q9GZV7 340 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 SUGCTQ9HAC7 445 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 DMAC2Q9NW81 257 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 RAI14Q9P0K7 980 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 IMPACTQ9P2X3 320 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 TMX2Q9Y320 296 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 TRAF6Q9Y4K3 522 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ATP6V1DQ9Y5K8 247 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 PLXNB3Q9ULL4 1909 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 KLRF2D3W0D1 207 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 F8W735 103 aaPredicted RBP2.59□□□□□ -1.99
VPS54-202ENST00000354504 hCG_1984214I3L0E3 225 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ABLIM1O14639 778 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 TGFB1I1O43294 461 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 MYO1BO43795 1136 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 CYP11A1P05108 521 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 NFICP08651 508 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 HSP90B1P14625 803 aaKnown RBP2.59□□□□□ -1.99
VPS54-202ENST00000354504 MASP1P48740 699 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 TDO2P48775 406 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ST5P78524 1137 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 KARSQ15046 597 aaKnown RBP2.59□□□□□ -1.99
VPS54-202ENST00000354504 KRT31Q15323 416 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 DUOXA2Q1HG44 320 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 SLC4A8Q2Y0W8 1093 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 LRRFIP1Q32MZ4 808 aaKnown RBP2.59□□□□□ -1.99
VPS54-202ENST00000354504 NBPF9Q3BBW0 867 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ZNF658Q5TYW1 1059 aaPredicted RBP2.59□□□□□ -1.99
VPS54-202ENST00000354504 ANKRD40Q6AI12 368 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 GALNT17Q6IS24 598 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 SLC30A10Q6XR72 485 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 PIK3AP1Q6ZUJ8 805 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 TMC3Q7Z5M5 1100 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 CDH24Q86UP0 819 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 KRTAP1-3Q8IUG1 177 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ARMC10Q8N2F6 343 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ZNF713Q8N859 430 aaPredicted RBP2.59□□□□□ -1.99
VPS54-202ENST00000354504 NLGN2Q8NFZ4 835 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 SLC5A5Q92911 643 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 KISS1RQ969F8 398 aaPredicted RBP2.59□□□□□ -1.99
VPS54-202ENST00000354504 COA7Q96BR5 231 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 GSDMAQ96QA5 445 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 WDR24Q96S15 920 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 CEP41Q9BYV8 373 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 KATNBL1Q9H079 304 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 GANQ9H2C0 597 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 TMEFF2Q9UIK5 374 aaPredicted RBP2.59□□□□□ -1.99
VPS54-202ENST00000354504 RWDD2AQ9UIY3 292 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 COL4A3BPQ9Y5P4 624 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 SCN5AQ14524 2016 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ATP8B3O60423 1300 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ADGRA2Q96PE1 1338 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 IGKV6D-21A0A0A0MT36 114 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ZBTB5O15062 677 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 TTLL1O95922 423 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 NDUFB10O96000 172 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 MYBP10242 640 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 RAG1P15918 1043 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 LMNB1P20700 586 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 HSD3B2P26439 372 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ECHS1P30084 290 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ADMP35318 185 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 PDE6BP35913 854 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 CTSKP43235 329 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 SYKP43405 635 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 CHMP4BP1P59074 171 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 CAP1Q01518 475 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 CXCL9Q07325 125 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ITGB3BPQ13352 177 aaPredicted RBP2.59□□□□□ -1.99
VPS54-202ENST00000354504 PPP2R5CQ13362 524 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ZNF174Q15697 407 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 SEPT7Q16181 437 aaKnown RBP2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms