RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 CFBP00751 764 aa16.97■□□□□ 0.31
HMGA1-202ENST00000347617 LMNAP02545 664 aaKnown RBP16.97■□□□□ 0.31
HMGA1-202ENST00000347617 NR3C1P04150 777 aa16.97■□□□□ 0.31
HMGA1-202ENST00000347617 GAP43P17677 238 aa16.97■□□□□ 0.31
HMGA1-202ENST00000347617 TNFAIP3P21580 790 aa16.97■□□□□ 0.31
HMGA1-202ENST00000347617 MTMR2Q13614 643 aa16.97■□□□□ 0.31
HMGA1-202ENST00000347617 LBRQ14739 615 aaKnown RBP16.97■□□□□ 0.31
HMGA1-202ENST00000347617 ZNF568Q3ZCX4 644 aa16.97■□□□□ 0.31
HMGA1-202ENST00000347617 ERICH1Q86X53 443 aa16.97■□□□□ 0.31
HMGA1-202ENST00000347617 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.97■□□□□ 0.31
HMGA1-202ENST00000347617 GLG1Q92896 1179 aa16.97■□□□□ 0.31
HMGA1-202ENST00000347617 ARHGEF2Q92974 986 aaKnown RBP16.97■□□□□ 0.31
HMGA1-202ENST00000347617 DCPSQ96C86 337 aaKnown RBP16.97■□□□□ 0.31
HMGA1-202ENST00000347617 ERVK-5Q9HDB9 667 aa16.97■□□□□ 0.31
HMGA1-202ENST00000347617 FGFR1OP2Q9NVK5 253 aa16.97■□□□□ 0.31
HMGA1-202ENST00000347617 CCPG1Q9ULG6 757 aa16.97■□□□□ 0.31
HMGA1-202ENST00000347617 ADAMTS5Q9UNA0 930 aa16.97■□□□□ 0.31
HMGA1-202ENST00000347617 MYPNQ86TC9 1320 aa16.96■□□□□ 0.31
HMGA1-202ENST00000347617 USP2O75604 605 aaPredicted RBP16.96■□□□□ 0.31
HMGA1-202ENST00000347617 UNC5CO95185 931 aa16.96■□□□□ 0.31
HMGA1-202ENST00000347617 YBX3P16989 372 aaKnown RBP eCLIP16.96■□□□□ 0.315e-37■■□□□ 14
HMGA1-202ENST00000347617 MAN1A1P33908 653 aa16.96■□□□□ 0.31
HMGA1-202ENST00000347617 STRN3Q13033 797 aa16.96■□□□□ 0.31
HMGA1-202ENST00000347617 NBPF20Q3BBV1 942 aa16.96■□□□□ 0.31
HMGA1-202ENST00000347617 DCAF17Q5H9S7 520 aaPredicted RBP16.96■□□□□ 0.31
HMGA1-202ENST00000347617 SH3D19Q5HYK7 790 aa16.96■□□□□ 0.31
HMGA1-202ENST00000347617 NUGGCQ68CJ6 796 aa16.96■□□□□ 0.31
HMGA1-202ENST00000347617 CEP128Q6ZU80 1094 aa16.96■□□□□ 0.31
HMGA1-202ENST00000347617 USP50Q70EL3 339 aaPredicted RBP16.96■□□□□ 0.31
HMGA1-202ENST00000347617 PRELID2Q8N945 189 aa16.96■□□□□ 0.31
HMGA1-202ENST00000347617 OLIG1Q8TAK6 271 aa16.96■□□□□ 0.31
HMGA1-202ENST00000347617 ZSWIM1Q9BR11 485 aa16.96■□□□□ 0.31
HMGA1-202ENST00000347617 CCDC113Q9H0I3 377 aa16.96■□□□□ 0.31
HMGA1-202ENST00000347617 KIF9Q9HAQ2 790 aa16.96■□□□□ 0.31
HMGA1-202ENST00000347617 OSGEPQ9NPF4 335 aa16.96■□□□□ 0.31
HMGA1-202ENST00000347617 UBE4BO95155 1302 aa16.96■□□□□ 0.3
HMGA1-202ENST00000347617 FRMPD4Q14CM0 1322 aa16.96■□□□□ 0.3
HMGA1-202ENST00000347617 IGLV3-22A0A075B6J6 115 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 TMEM120BA0PK00 339 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 SMIM23A6NLE4 172 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 FAM86B1E9PN63 330 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 EIF3DO15371 548 aaKnown RBP eCLIP16.95■□□□□ 0.33e-11■□□□□ 8.3
HMGA1-202ENST00000347617 HNRNPCL1O60812 293 aaKnown RBP16.95■□□□□ 0.3
HMGA1-202ENST00000347617 MTA2O94776 668 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 SNUPNO95149 360 aaKnown RBP16.95■□□□□ 0.3
HMGA1-202ENST00000347617 FAM86B2P0C5J1 330 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 HOXA13P31271 388 aaPredicted RBP16.95■□□□□ 0.3
HMGA1-202ENST00000347617 RASSF2P50749 326 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 GIT2Q14161 759 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 KIF22Q14807 665 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 SETDB1Q15047 1291 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 MTFR1Q15390 333 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 SGSM1Q2NKQ1 1148 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 PRR16Q569H4 304 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 WASHC2DQ5SRD0 308 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 TCERG1LQ5VWI1 586 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 C9orf131Q5VYM1 1079 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 CCDC137Q6PK04 289 aaKnown RBP16.95■□□□□ 0.3
HMGA1-202ENST00000347617 NIPA1Q7RTP0 329 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 APBB1IPQ7Z5R6 666 aaPredicted RBP16.95■□□□□ 0.3
HMGA1-202ENST00000347617 EGFL6Q8IUX8 553 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 MFN1Q8IWA4 741 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 KIRREL3Q8IZU9 778 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 SYT2Q8N9I0 419 aaPredicted RBP16.95■□□□□ 0.3
HMGA1-202ENST00000347617 CLEC4DQ8WXI8 215 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 LRMDAQ9H2I8 198 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 RPAP3Q9H6T3 665 aaPredicted RBP16.95■□□□□ 0.3
HMGA1-202ENST00000347617 RNPEPL1Q9HAU8 725 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 LGALS13Q9UHV8 139 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 AFG3L2Q9Y4W6 797 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 ZHX2Q9Y6X8 837 aa16.95■□□□□ 0.3
HMGA1-202ENST00000347617 ATP2A1O14983 1001 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 AKAP3O75969 853 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 NPTXRO95502 500 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 MUTP22033 750 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 CALB2P22676 271 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 PSMC2P35998 433 aaKnown RBP16.94■□□□□ 0.3
HMGA1-202ENST00000347617 ZNF76P36508 570 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 COILP38432 576 aaPredicted RBP16.94■□□□□ 0.3
HMGA1-202ENST00000347617 PPARDQ03181 441 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 SPIRE1Q08AE8 756 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 PTPROQ16827 1216 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 ARSHQ5FYA8 562 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 INTS8Q75QN2 995 aaKnown RBP16.94■□□□□ 0.3
HMGA1-202ENST00000347617 GLYCTKQ8IVS8 523 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 SULF1Q8IWU6 871 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 RIBC1Q8N443 379 aaPredicted RBP16.94■□□□□ 0.3
HMGA1-202ENST00000347617 MAIP1Q8WWC4 291 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 PLVAPQ9BX97 442 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 OSBPL1AQ9BXW6 950 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 NKIRAS1Q9NYS0 192 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 CPSF2Q9P2I0 782 aaKnown RBP16.94■□□□□ 0.3
HMGA1-202ENST00000347617 DNM3Q9UQ16 869 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 SSC5DA1L4H1 1573 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 ADGRA3Q8IWK6 1321 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 LRRD1A4D1F6 860 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 BCRP11274 1271 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 GNAZP19086 355 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 ITIH2P19823 946 aa16.94■□□□□ 0.3
HMGA1-202ENST00000347617 BRD2P25440 801 aaKnown RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms