RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 GAD1Q99259 594 aa12.9□□□□□ -0.34
SNCA-202ENST00000345009 PLVAPQ9BX97 442 aa12.9□□□□□ -0.34
SNCA-202ENST00000345009 CLSTN2Q9H4D0 955 aa12.9□□□□□ -0.34
SNCA-202ENST00000345009 RPF1Q9H9Y2 349 aaKnown RBP12.9□□□□□ -0.34
SNCA-202ENST00000345009 TYW1Q9NV66 732 aaKnown RBP12.9□□□□□ -0.34
SNCA-202ENST00000345009 SLC38A7Q9NVC3 462 aa12.9□□□□□ -0.34
SNCA-202ENST00000345009 KIAA1468Q9P260 1216 aa12.9□□□□□ -0.34
SNCA-202ENST00000345009 YBX2Q9Y2T7 364 aaKnown RBP12.9□□□□□ -0.34
SNCA-202ENST00000345009 LINC01553A4QN01 128 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 ANKRD63C9JTQ0 380 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 ABLIM1O14639 778 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 PSMA7O14818 248 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 INPPL1O15357 1258 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 XPOTO43592 962 aaKnown RBP12.89□□□□□ -0.35
SNCA-202ENST00000345009 ALDH2P05091 517 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 THP07101 528 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 RPL13P26373 211 aaKnown RBP12.89□□□□□ -0.35
SNCA-202ENST00000345009 MLH1P40692 756 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 ERVK-21P61565 698 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 TAP1Q03518 808 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 TMEM192Q8IY95 271 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 KIAA0895Q8NCT3 520 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 GLIS3Q8NEA6 775 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 CLP1Q92989 425 aaKnown RBP12.89□□□□□ -0.35
SNCA-202ENST00000345009 FGFBP2Q9BYJ0 223 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 ZNF576Q9H609 170 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 RC3H2Q9HBD1 1191 aaKnown RBP12.89□□□□□ -0.35
SNCA-202ENST00000345009 TBC1D13Q9NVG8 400 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 KLK14Q9P0G3 267 aa12.89□□□□□ -0.35
SNCA-202ENST00000345009 LCHNA4D1U4 455 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 ZNF233A6NK53 670 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 MEIS3P2A8K0S8 358 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 ARHGAP33O14559 1287 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 EXTL3O43909 919 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 POMCP01189 267 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 ADSSP30520 456 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 PPM1AP35813 382 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 BMPR1AP36894 532 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 GATMP50440 423 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 KRT17Q04695 432 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 PPP2R3AQ06190 1150 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 GRIK3Q13003 919 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 MYBPC2Q14324 1141 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 SURF1Q15526 300 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 COBLL1Q53SF7 1204 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 SLC39A4Q6P5W5 647 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 GPT2Q8TD30 523 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 NOC3LQ8WTT2 800 aaKnown RBP12.88□□□□□ -0.35
SNCA-202ENST00000345009 ERCC4Q92889 916 aaPredicted RBP12.88□□□□□ -0.35
SNCA-202ENST00000345009 ZFP42Q96MM3 310 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 ZNF558Q96NG5 402 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 KCNK17Q96T54 332 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 TSG101Q99816 390 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 FAM213AQ9BRX8 229 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 C11orf84Q9BUA3 381 aaPredicted RBP12.88□□□□□ -0.35
SNCA-202ENST00000345009 AGPAT3Q9NRZ7 376 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 RNF19AQ9NV58 838 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 STK39Q9UEW8 545 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 PUF60Q9UHX1 559 aaKnown RBP12.88□□□□□ -0.35
SNCA-202ENST00000345009 MAN1B1Q9UKM7 699 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 MAPK8IP1Q9UQF2 711 aa12.88□□□□□ -0.35
SNCA-202ENST00000345009 MRPL42Q9Y6G3 142 aaKnown RBP12.88□□□□□ -0.35
SNCA-202ENST00000345009 TULP1O00294 542 aaPredicted RBP12.87□□□□□ -0.35
SNCA-202ENST00000345009 SOX1O00570 391 aaPredicted RBP12.87□□□□□ -0.35
SNCA-202ENST00000345009 ZC3H11AO75152 810 aaKnown RBP eCLIP12.87□□□□□ -0.35
SNCA-202ENST00000345009 IL18RAPO95256 599 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 KCNE1P15382 129 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 CTNNB1P35222 781 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 HOXD13P35453 343 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 ACOT2P49753 483 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 SCNN1GP51170 649 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 BMS1Q14692 1282 aaKnown RBP12.87□□□□□ -0.35
SNCA-202ENST00000345009 SKOR2Q2VWA4 1001 aaPredicted RBP12.87□□□□□ -0.35
SNCA-202ENST00000345009 ALKAL1Q6UXT8 129 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 USP37Q86T82 979 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 C12orf56Q8IXR9 622 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 GPD1LQ8N335 351 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 CEP120Q8N960 986 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 XXYLT1Q8NBI6 393 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 ARNTL2Q8WYA1 636 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 DHTKD1Q96HY7 919 aaPredicted RBP12.87□□□□□ -0.35
SNCA-202ENST00000345009 LRCH3Q96II8 777 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 CBWD1Q9BRT8 395 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 TMEM175Q9BSA9 504 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 SEMA6BQ9H3T3 888 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 PCIF1Q9H4Z3 704 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 ASB7Q9H672 318 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 HSPBP1Q9NZL4 362 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 CPSF3Q9UKF6 684 aaKnown RBP12.87□□□□□ -0.35
SNCA-202ENST00000345009 FRMD4BQ9Y2L6 1034 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 FAN1Q9Y2M0 1017 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 CHD9Q3L8U1 2897 aa12.87□□□□□ -0.35
SNCA-202ENST00000345009 SMIM28A0A1B0GU29 152 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 BICDL2A1A5D9 508 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 C5orf67F2Z3F1 127 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 RBAK-RBAKDNI3L0D1 243 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 BIN1O00499 593 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 CLIC2O15247 247 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 TGFB1I1O43294 461 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 EXOC3O60645 756 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms