RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 AFG3L2Q9Y4W6 797 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 TLDC2A0PJX2 215 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 FDX1P10109 184 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 GPC3P51654 580 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 CDR2Q01850 454 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 SF3A3Q12874 501 aaKnown RBP eCLIP11.09□□□□□ -0.63
LIMA1-201ENST00000341247 LY6KQ17RY6 165 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 ZNF394Q53GI3 561 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 UBAP2Q5T6F2 1119 aaKnown RBP11.09□□□□□ -0.63
LIMA1-201ENST00000341247 CCDC105Q8IYK2 499 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 C1orf54Q8WWF1 131 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 OTUD5Q96G74 571 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 SLITRK6Q9H5Y7 841 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 GPRC5DQ9NZD1 345 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 UMODL1Q5DID0 1318 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 CLDN3O15551 220 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 IVLP07476 585 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 SRGAP2CP0DJJ0 459 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 NR1D1P20393 614 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 OSTNP61366 133 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 IFFO1Q0D2I5 559 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 TRIP13Q15645 432 aaPredicted RBP11.09□□□□□ -0.63
LIMA1-201ENST00000341247 BRDTQ58F21 947 aaPredicted RBP11.09□□□□□ -0.63
LIMA1-201ENST00000341247 WDR44Q5JSH3 913 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 TDRD10Q5VZ19 366 aaKnown RBP11.09□□□□□ -0.63
LIMA1-201ENST00000341247 TTC27Q6P3X3 843 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 TMEM270Q6UE05 265 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 CCDC25Q86WR0 208 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 JAMLQ86YT9 394 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 SAMD3Q8N6K7 520 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 PRELID2Q8N945 189 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 SLC7A3Q8WY07 619 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 PPP1R16BQ96T49 567 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 MSTO1Q9BUK6 570 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 RRP15Q9Y3B9 282 aaKnown RBP11.09□□□□□ -0.63
LIMA1-201ENST00000341247 MAFGO15525 162 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 ECM2O94769 699 aaPredicted RBP11.09□□□□□ -0.63
LIMA1-201ENST00000341247 OATP04181 439 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 UBA1P22314 1058 aaKnown RBP11.09□□□□□ -0.63
LIMA1-201ENST00000341247 RRM1P23921 792 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 PTENP60484 403 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 LRRC71Q8N4P6 559 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 FBXO25Q8TCJ0 367 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 LRRC45Q96CN5 670 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 CYFIP2Q96F07 1278 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 FMO2Q99518 471 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 C11orf70Q9BRQ4 267 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 NTPCRQ9BSD7 190 aaKnown RBP11.09□□□□□ -0.63
LIMA1-201ENST00000341247 ELP3Q9H9T3 547 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 DNAJC17Q9NVM6 304 aaKnown RBP11.09□□□□□ -0.63
LIMA1-201ENST00000341247 RBAKQ9NYW8 714 aaPredicted RBP11.09□□□□□ -0.63
LIMA1-201ENST00000341247 ARHGAP28Q9P2N2 729 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 USTQ9Y2C2 406 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 PTPRFP10586 1907 aa11.09□□□□□ -0.63
LIMA1-201ENST00000341247 DCDC2CA8MYV0 355 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 USP2O75604 605 aaPredicted RBP11.08□□□□□ -0.64
LIMA1-201ENST00000341247 GJB1P08034 283 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 MYZAPP0CAP1 466 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 MAPK4P31152 587 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 VPS41P49754 854 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 SEC24CP53992 1094 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 TTLL12Q14166 644 aaPredicted RBP11.08□□□□□ -0.64
LIMA1-201ENST00000341247 KRT71Q3SY84 523 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 ZFYVE27Q5T4F4 411 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 XRRA1Q6P2D8 792 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 USP37Q86T82 979 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 TMEM130Q8N3G9 435 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 SLC17A8Q8NDX2 589 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 RDM1Q8NG50 284 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 OR5B17Q8NGF7 314 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 CDHR1Q96JP9 859 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 HEMGNQ9BXL5 484 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 PDLIM7Q9NR12 457 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 GINM1Q9NU53 330 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 ADAMTS5Q9UNA0 930 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 PCDHB4Q9Y5E5 795 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 DKC1O60832 514 aaKnown RBP eCLIP11.08□□□□□ -0.64
LIMA1-201ENST00000341247 POU5F1Q01860 360 aaKnown RBP11.08□□□□□ -0.64
LIMA1-201ENST00000341247 ZNF844Q08AG5 666 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 CCDC137Q6PK04 289 aaKnown RBP11.08□□□□□ -0.64
LIMA1-201ENST00000341247 TMC3Q7Z5M5 1100 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 TMC2Q8TDI7 906 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 ATP8B4Q8TF62 1192 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 ATG4AQ8WYN0 398 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 CLMNQ96JQ2 1002 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 ATP6V1G3Q96LB4 118 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 NOVA2Q9UNW9 492 aaKnown RBP11.08□□□□□ -0.64
LIMA1-201ENST00000341247 OTOFQ9HC10 1997 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 SYNGAP1Q96PV0 1343 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 O00370 1275 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 MAPK13O15264 365 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 CD58P19256 250 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 SCP2P22307 547 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 TMOD1P28289 359 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 TNFSF9P41273 254 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 TMEM63BQ5T3F8 832 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 MREGQ8N565 214 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 DDX1Q92499 740 aaKnown RBP11.08□□□□□ -0.64
LIMA1-201ENST00000341247 FBXL18Q96ME1 805 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 NAP1L3Q99457 506 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms