RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 FLRT1Q9NZU1 646 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 MAGEA13PA6NCF6 341 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 TCP11X1B4DZS4 312 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 NVLO15381 856 aaKnown RBP5.99□□□□□ -1.45
CSDE1-202ENST00000339438 ZBTB43O43298 467 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 AGTP01019 485 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 GH1P01241 217 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 ETS2P15036 469 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 MAGEA1P43355 309 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 LHX8Q68G74 356 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 NCCRP1Q6ZVX7 275 aaPredicted RBP5.99□□□□□ -1.45
CSDE1-202ENST00000339438 SLFN11Q7Z7L1 901 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 DZIP1Q86YF9 867 aaKnown RBP5.99□□□□□ -1.45
CSDE1-202ENST00000339438 CCDC82Q8N4S0 544 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 SLC43A3Q8NBI5 491 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 TRPV1Q8NER1 839 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 CKAP2Q8WWK9 683 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 EEF2KMTQ96G04 330 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 DDX50Q9BQ39 737 aaKnown RBP5.99□□□□□ -1.45
CSDE1-202ENST00000339438 GRHL1Q9NZI5 618 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 RBPJLQ9UBG7 517 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 ZNF214Q9UL59 606 aaPredicted RBP5.99□□□□□ -1.45
CSDE1-202ENST00000339438 RPL26L1Q9UNX3 145 aaKnown RBP5.99□□□□□ -1.45
CSDE1-202ENST00000339438 EFR3BQ9Y2G0 817 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 C2orf16Q68DN1 1984 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 NOTCH4Q99466 2003 aa5.99□□□□□ -1.45
CSDE1-202ENST00000339438 BTBD19C9JJ37 291 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 TBX10O75333 385 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 UQCRFS1P1P0C7P4 283 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 USP11P51784 963 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 NEK3P51956 506 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 MCCD1P59942 119 aaPredicted RBP5.98□□□□□ -1.45
CSDE1-202ENST00000339438 TNNC1P63316 161 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 EHHADHQ08426 723 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 SSRP1Q08945 709 aaKnown RBP5.98□□□□□ -1.45
CSDE1-202ENST00000339438 IRF5Q13568 498 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 PDXDC1Q6P996 788 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 C4orf50Q6ZRC1 276 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 EPS8L3Q8TE67 593 aaKnown RBP5.98□□□□□ -1.45
CSDE1-202ENST00000339438 LZICQ8WZA0 190 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 PPP1R14BQ96C90 147 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 CNOT6LQ96LI5 555 aaKnown RBP5.98□□□□□ -1.45
CSDE1-202ENST00000339438 AP1M1Q9BXS5 423 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 KIAA1683Q9H0B3 1180 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 TRPV5Q9NQA5 729 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 PDP2Q9P2J9 529 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 SCOCQ9UIL1 159 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 SLC4A4Q9Y6R1 1079 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 MYPNQ86TC9 1320 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 ATP9BO43861 1147 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 TMCC1O94876 653 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 EPHB2P29323 1055 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 VHLP40337 213 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 YARSP54577 528 aaKnown RBP5.98□□□□□ -1.45
CSDE1-202ENST00000339438 RCN2Q14257 317 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 GRM2Q14416 872 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 HLTFQ14527 1009 aaKnown RBP eCLIP5.98□□□□□ -1.45
CSDE1-202ENST00000339438 BCL2A1Q16548 175 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 COBLL1Q53SF7 1204 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 TMEM63BQ5T3F8 832 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 DCAF12L1Q5VU92 463 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 SNX30Q5VWJ9 437 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 B3GNT9Q6UX72 402 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 SCYL3Q8IZE3 742 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 CMTR1Q8N1G2 835 aaKnown RBP5.98□□□□□ -1.45
CSDE1-202ENST00000339438 RIN3Q8TB24 985 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 TMEM87BQ96K49 555 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 IFT74Q96LB3 600 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 CCDC28BQ9BUN5 200 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 DDX23Q9BUQ8 820 aaKnown RBP5.98□□□□□ -1.45
CSDE1-202ENST00000339438 ZC3H12CQ9C0D7 883 aaKnown RBP5.98□□□□□ -1.45
CSDE1-202ENST00000339438 VCXQ9H320 206 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 DCLRE1BQ9H816 532 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.98□□□□□ -1.456e-7■■■■■ 114.9
CSDE1-202ENST00000339438 RHBDL2Q9NX52 303 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 CTTNBP2NLQ9P2B4 639 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 A6NJR5 290 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 B4E1Z4 1266 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 ZNF213O14771 459 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 VILLO15195 856 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 LINC00271P0C7V0 271 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 DESP17661 470 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 BTDP43251 543 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 GJA8P48165 433 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 IFNAR2P48551 515 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 CDK7P50613 346 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 SLC29A2Q14542 456 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 GSTA3Q16772 222 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 TRAF7Q6Q0C0 670 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 DSTYKQ6XUX3 929 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 PALB2Q86YC2 1186 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 METTL13Q8N6R0 699 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 FBF1Q8TES7 1133 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 C17orf50Q8WW18 174 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 LENG1Q96BZ8 264 aaPredicted RBP5.98□□□□□ -1.45
CSDE1-202ENST00000339438 NR1H4Q96RI1 486 aaPredicted RBP5.98□□□□□ -1.45
CSDE1-202ENST00000339438 GOLPH3Q9H4A6 298 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 CYLDQ9NQC7 956 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 KBTBD4Q9NVX7 518 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 ZNHIT6Q9NWK9 470 aaKnown RBP5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms