RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 C2CD2LO14523 706 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 LIFRP42702 1097 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 CAPZA2P47755 286 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 AP2B1P63010 937 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 CDK17Q00537 523 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 TBL3Q12788 808 aaKnown RBP13.31□□□□□ -0.28
SDC3-201ENST00000336798 TMEM106CQ9BVX2 250 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 CHRNA5P30532 468 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 INPP5DQ92835 1189 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 RGL1Q9NZL6 768 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 AGAP1Q9UPQ3 857 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 UTYO14607 1347 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 PRRG1O14668 218 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 ADCY3O60266 1144 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 HSPA1AP0DMV8 641 aaKnown RBP13.31□□□□□ -0.28
SDC3-201ENST00000336798 HSPA1BP0DMV9 641 aaKnown RBP13.31□□□□□ -0.28
SDC3-201ENST00000336798 OTUB1Q96FW1 271 aaPredicted RBP13.31□□□□□ -0.28
SDC3-201ENST00000336798 RSPH10B2B2RC85 870 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 KRT7P08729 469 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 RSPH10BP0C881 870 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 CARSP49589 748 aaKnown RBP13.31□□□□□ -0.28
SDC3-201ENST00000336798 MAP3K7CLP57077 242 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 GJC2Q5T442 439 aaPredicted RBP13.31□□□□□ -0.28
SDC3-201ENST00000336798 COG1Q8WTW3 980 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 DDX28Q9NUL7 540 aaKnown RBP13.31□□□□□ -0.28
SDC3-201ENST00000336798 MARCOQ9UEW3 520 aaPredicted RBP13.31□□□□□ -0.28
SDC3-201ENST00000336798 SNX9Q9Y5X1 595 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 CFAP43Q8NDM7 1665 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 ZNF263O14978 683 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 SERPINI2O75830 405 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 CCDC159P0C7I6 412 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 IMPDH2P12268 514 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 CDC27P30260 824 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 SKOR1P84550 965 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 WDR72Q3MJ13 1102 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 C6orf10Q5SRN2 563 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 DGKHQ86XP1 1220 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 KCNH4Q9UQ05 1017 aa13.31□□□□□ -0.28
SDC3-201ENST00000336798 MIF4GDA9UHW6 222 aaKnown RBP13.3□□□□□ -0.28
SDC3-201ENST00000336798 TRIM66O15016 1216 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 ALDH1A1P00352 501 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 PRKCBP05771 671 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 TCN1P20061 433 aaPredicted RBP13.3□□□□□ -0.28
SDC3-201ENST00000336798 NEK2P51955 445 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 EPHA10Q5JZY3 1008 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 MFSD4BQ5TF39 518 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 STAG2Q8N3U4 1231 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 ZNF229Q9UJW7 825 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 FOXN1O15353 648 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 YWHABP31946 246 aaKnown RBP13.3□□□□□ -0.28
SDC3-201ENST00000336798 SOAT1P35610 550 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 EN1Q05925 392 aaPredicted RBP13.3□□□□□ -0.28
SDC3-201ENST00000336798 DEUP1Q05D60 604 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 TOB2Q14106 344 aaPredicted RBP13.3□□□□□ -0.28
SDC3-201ENST00000336798 BTNL9Q6UXG8 535 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 PLEKHM3Q6ZWE6 761 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 PHF21AQ96BD5 680 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 APOL5Q9BWW9 433 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 IL1RL2Q9HB29 575 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 EML4Q9HC35 981 aaKnown RBP13.3□□□□□ -0.28
SDC3-201ENST00000336798 PARVAQ9NVD7 372 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 TSC22D4Q9Y3Q8 395 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 DYNC1LI2O43237 492 aaPredicted RBP13.3□□□□□ -0.28
SDC3-201ENST00000336798 IFNEQ86WN2 208 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 MS4A14Q96JA4 679 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 PRMT1Q99873 361 aaKnown RBP13.3□□□□□ -0.28
SDC3-201ENST00000336798 C6orf222P0C671 652 aaPredicted RBP13.3□□□□□ -0.28
SDC3-201ENST00000336798 EMBQ6PCB8 327 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 APOBEC3FQ8IUX4 373 aaKnown RBP13.3□□□□□ -0.28
SDC3-201ENST00000336798 RHOT1Q8IXI2 618 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 TEX33O43247 280 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 PNMA6AP0CW24 399 aaPredicted RBP13.3□□□□□ -0.28
SDC3-201ENST00000336798 KRT4P19013 534 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 RFX3P48380 749 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 PPP2R2AP63151 447 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 MGAT5BQ3V5L5 792 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 APPL2Q8NEU8 664 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 OSBPL1AQ9BXW6 950 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 LATS2Q9NRM7 1088 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 DDX56Q9NY93 547 aaKnown RBP13.3□□□□□ -0.28
SDC3-201ENST00000336798 PKP3Q9Y446 797 aa13.3□□□□□ -0.28
SDC3-201ENST00000336798 PZPP20742 1482 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 SUPT3HB4E1H0 165 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 ASAP2O43150 1006 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 TWF1Q12792 350 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 ANGPT1Q15389 498 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 KIF2CQ99661 725 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 ETNK1Q9HBU6 452 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 ZFATQ9P243 1243 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 PNMA8BQ9ULN7 279 aaPredicted RBP13.29□□□□□ -0.28
SDC3-201ENST00000336798 METP08581 1390 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 KIAA0556O60303 1618 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 CYP2B6P20813 491 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 SFNP31947 248 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 DUOXA2Q1HG44 320 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 ARHGEF12Q9NZN5 1544 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 ANGPT2O15123 496 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 ORC4O43929 436 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 HIST1H2AGP0C0S8 130 aaPredicted RBP13.29□□□□□ -0.28
SDC3-201ENST00000336798 HIST1H2ADP20671 130 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms