RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 COQ9O75208 318 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 ETS2P15036 469 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 FMO5P49326 533 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 IL9RQ01113 521 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 C4orf50Q6ZRC1 276 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 C7orf43Q8WVR3 580 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 GJD4Q96KN9 370 aaPredicted RBP14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 AGPAT1Q99943 283 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 VCXQ9H320 206 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 RIOX1Q9H6W3 641 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 QTRT2Q9H974 415 aaKnown RBP14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 NPHS2Q9NP85 383 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 E7ENQ6 273 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 PDXKO00764 312 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 TBX10O75333 385 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 C1QTNF12Q5T7M4 302 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 RHBDF2Q6PJF5 856 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 CYFIP1Q7L576 1253 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 ZFAND2BQ8WV99 257 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 WDR60Q8WVS4 1066 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 KAT5Q92993 513 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 DCLRE1BQ9H816 532 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 CHCHD3Q9NX63 227 aaKnown RBP14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 POC1B-GALNT4F8VUJ3 575 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 ZBTB39O15060 712 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 CYP1A1P04798 512 aaPredicted RBP14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 IVDP26440 423 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 RPA3P35244 121 aaPredicted RBP14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 NEK3P51956 506 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 MKRN3Q13064 507 aaKnown RBP14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 SGO2Q562F6 1265 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 IRGCQ6NXR0 463 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 PCDHB18PQ96TA0 734 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 CDCA7Q9BWT1 371 aaPredicted RBP14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 INTS2Q9H0H0 1204 aaKnown RBP14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 BHMT2Q9H2M3 363 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 MTUS1Q9ULD2 1270 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 WASF2Q9Y6W5 498 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 DOT1LQ8TEK3 1739 aa14.34□□□□□ -0.11
CCDC88C-201ENST00000331194 MYH14Q7Z406 1995 aaKnown RBP14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 ESYT2A0FGR8 921 aa14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 FAM47DPA6NHR8 397 aa14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 ASMTLO95671 621 aa14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 ANXA13P27216 316 aa14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 MARK3P27448 753 aa14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 ATP5DP30049 168 aa14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 ADCY8P40145 1251 aa14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 VHLP40337 213 aa14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 SLC1A5Q15758 541 aa14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 HYIQ5T013 277 aa14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 HHATQ5VTY9 493 aa14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 INPP5DQ92835 1189 aa14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 TYW1Q9NV66 732 aaKnown RBP14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.33□□□□□ -0.11
CCDC88C-201ENST00000331194 CALCAP01258 141 aa14.33□□□□□ -0.12
CCDC88C-201ENST00000331194 GSTT1P30711 240 aa14.33□□□□□ -0.12
CCDC88C-201ENST00000331194 ORC2Q13416 577 aaPredicted RBP14.33□□□□□ -0.12
CCDC88C-201ENST00000331194 WASHC2DQ5SRD0 308 aa14.33□□□□□ -0.12
CCDC88C-201ENST00000331194 C10orf82Q8WW14 230 aa14.33□□□□□ -0.12
CCDC88C-201ENST00000331194 ALG13Q9NP73 1137 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-201ENST00000331194 UBE2TQ9NPD8 197 aaPredicted RBP14.33□□□□□ -0.12
CCDC88C-201ENST00000331194 ZFP69BQ9UJL9 534 aa14.33□□□□□ -0.12
CCDC88C-201ENST00000331194 R3HDM2Q9Y2K5 976 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-201ENST00000331194 STARD13Q9Y3M8 1113 aa14.33□□□□□ -0.12
CCDC88C-201ENST00000331194 KDM3AQ9Y4C1 1321 aa14.33□□□□□ -0.12
CCDC88C-201ENST00000331194 GSTTP1A0A1W2PQM5 241 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 CFAP69A5D8W1 941 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 C2orf71A6NGG8 1288 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 RAD21O60216 631 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 EYA4O95677 639 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 SPATA31D3P0C874 917 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 SLURP2P0DP57 97 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 SCNN1BP51168 640 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 SPATA31D4Q6ZUB0 917 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 CCDC125Q86Z20 511 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 HEMGNQ9BXL5 484 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 JMJD4Q9H9V9 463 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 TMEM165Q9HC07 324 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 METTL14Q9HCE5 456 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 LRRC4BQ9NT99 713 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 STOML1Q9UBI4 398 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 ANAPC5Q9UJX4 755 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 LRCH1Q9Y2L9 728 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 COL22A1Q8NFW1 1626 aaPredicted RBP14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 MIF4GDA9UHW6 222 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 BAG3O95817 575 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 FAM163BP0C2L3 166 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 RRM1P23921 792 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 CDR2Q01850 454 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 PKN2Q16513 984 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 CYP1B1Q16678 543 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 NLRP9Q7RTR0 991 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 OTOAQ7RTW8 1153 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 ADGRF4Q8IZF3 695 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 MAIP1Q8WWC4 291 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 SLC5A5Q92911 643 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 GRAMD1AQ96CP6 724 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 ARL8BQ9NVJ2 186 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 SNED1Q8TER0 1413 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms