RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 KCNA1Q09470 495 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 CYP4A22Q5TCH4 519 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 ICE2Q659A1 982 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 STYK1Q6J9G0 422 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 CATSPER3Q86XQ3 398 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 VCX3AQ9NNX9 186 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 KCNH7Q9NS40 1196 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 APEX2Q9UBZ4 518 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 STAP1Q9ULZ2 295 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 KCNH4Q9UQ05 1017 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 FMO5P49326 533 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 TFDP2Q14188 446 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 PID1Q7Z2X4 250 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 RHOT1Q8IXI2 618 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 APPL2Q8NEU8 664 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 BHMTQ93088 406 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 GPRC5CQ9NQ84 441 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 NDFIP2Q9NV92 336 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 NYAP2Q9P242 653 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.77□□□□□ -0.68
CHD3-201ENST00000330494 ADAMTS13Q76LX8 1427 aa10.77□□□□□ -0.68
CHD3-201ENST00000330494 RTN2O75298 545 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 GH1P01241 217 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 GYS1P13807 737 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 ATICP31939 592 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 NT5C2P49902 561 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 RPS6P62753 249 aaKnown RBP10.77□□□□□ -0.69
CHD3-201ENST00000330494 ORC2Q13416 577 aaPredicted RBP10.77□□□□□ -0.69
CHD3-201ENST00000330494 NBPF9Q3BBW0 867 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 XKR3Q5GH77 459 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 GLRA4Q5JXX5 417 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 RASGRP2Q7LDG7 609 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 DHX38Q92620 1227 aaKnown RBP10.77□□□□□ -0.69
CHD3-201ENST00000330494 PGBD4Q96DM1 585 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 WNT8AQ9H1J5 351 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 A0A087WUV0 522 aaPredicted RBP10.77□□□□□ -0.69
CHD3-201ENST00000330494 MIF4GDA9UHW6 222 aaKnown RBP10.77□□□□□ -0.69
CHD3-201ENST00000330494 ENTPD3O75355 529 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 KCNB1Q14721 858 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 SEPT1Q8WYJ6 367 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 RMDN1Q96DB5 314 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 SEPT5Q99719 369 aaPredicted RBP10.77□□□□□ -0.69
CHD3-201ENST00000330494 CCSER1Q9C0I3 900 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 KCNF1Q9H3M0 494 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 CYP26B1Q9NR63 512 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 DIS3Q9Y2L1 958 aaKnown RBP10.77□□□□□ -0.69
CHD3-201ENST00000330494 PXDNLA1KZ92 1463 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 APOL1O14791 398 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 FXR1P51114 621 aaKnown RBP eCLIP10.77□□□□□ -0.69
CHD3-201ENST00000330494 KPNA2P52292 529 aaKnown RBP10.77□□□□□ -0.69
CHD3-201ENST00000330494 SPARCL1Q14515 664 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 SLC15A2Q16348 729 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 MMS22LQ6ZRQ5 1243 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 C7orf25Q9BPX7 421 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 ZCWPW1Q9H0M4 648 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 CNOT10Q9H9A5 744 aaKnown RBP10.77□□□□□ -0.69
CHD3-201ENST00000330494 C19orf81C9J6K1 198 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 ESRRBO95718 433 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 SESN2P58004 480 aaPredicted RBP10.77□□□□□ -0.69
CHD3-201ENST00000330494 TAF11Q15544 211 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.77□□□□□ -0.69
CHD3-201ENST00000330494 IZUMO3Q5VZ72 239 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 TMED8Q6PL24 325 aaPredicted RBP10.77□□□□□ -0.69
CHD3-201ENST00000330494 ZNF507Q8TCN5 953 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 TSC22D3Q99576 134 aa10.77□□□□□ -0.69
CHD3-201ENST00000330494 NPTXRO95502 500 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 HOXA7P31268 230 aaPredicted RBP10.76□□□□□ -0.69
CHD3-201ENST00000330494 ATG16L1Q676U5 607 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 ADGRA1Q86SQ6 560 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 TBC1D1Q86TI0 1168 aaPredicted RBP10.76□□□□□ -0.69
CHD3-201ENST00000330494 ZCCHC17Q9NP64 241 aaKnown RBP10.76□□□□□ -0.69
CHD3-201ENST00000330494 HMGB1P1B2RPK0 211 aaPredicted RBP10.76□□□□□ -0.69
CHD3-201ENST00000330494 PDXKO00764 312 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 KRT7P08729 469 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 OR1G1P47890 313 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 ERFP50548 548 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 MDH1BQ5I0G3 518 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 ASIC4Q96FT7 647 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 RNPC3Q96LT9 517 aaKnown RBP10.76□□□□□ -0.69
CHD3-201ENST00000330494 MOV10L1Q9BXT6 1211 aaKnown RBP10.76□□□□□ -0.69
CHD3-201ENST00000330494 Q9H521 79 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 CNTNAP4Q9C0A0 1308 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 GPR75-ASB3A0A0A6YYF3 556 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 TCF7P36402 384 aaPredicted RBP10.76□□□□□ -0.69
CHD3-201ENST00000330494 EFNA5P52803 228 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 PCSK7Q16549 785 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 RBBP7Q16576 425 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 TMEM259Q4ZIN3 620 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 C3orf67Q6ZVT6 689 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 MTA3Q9BTC8 594 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 LRRC1Q9BTT6 524 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 TRAIPQ9BWF2 469 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 RPS6KA5O75582 802 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 EIF3BP55884 814 aaKnown RBP10.76□□□□□ -0.69
CHD3-201ENST00000330494 ATF7IP2Q5U623 682 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 ELMO3Q96BJ8 720 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 TRIM51Q9BSJ1 452 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 GGT7Q9UJ14 662 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 FER1L4A9Z1Z3 1794 aa10.76□□□□□ -0.69
CHD3-201ENST00000330494 KBTBD13C9JR72 458 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms