RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TWF2Q6IBS0 349 aaKnown RBP10.86□□□□□ -0.67
HMGB3-201ENST00000325307 SLC27A1Q6PCB7 646 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 FAM228AQ86W67 206 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 SLC43A3Q8NBI5 491 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 APOL6Q9BWW8 343 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 AKR1B15C9JRZ8 316 aaPredicted RBP10.86□□□□□ -0.67
HMGB3-201ENST00000325307 GYPCP04921 128 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 AXLP30530 894 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 BIRC3Q13489 604 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 PSMD6Q15008 389 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 DCAF4L1Q3SXM0 396 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 CACNA2D4Q7Z3S7 1137 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 RPAINQ86UA6 219 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 BRSK2Q8IWQ3 736 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 CCDC150Q8NCX0 1101 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 FAM84AQ96KN4 292 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 NUP58Q9BVL2 599 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.86□□□□□ -0.67
HMGB3-201ENST00000325307 ST3GAL5Q9UNP4 418 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 SIK3Q9Y2K2 1263 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 FRMPD3Q5JV73 1810 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 CLTAP09496 248 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 CXCL8P10145 99 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 CCAR2Q8N163 923 aaKnown RBP10.86□□□□□ -0.67
HMGB3-201ENST00000325307 EIF2AQ9BY44 585 aaKnown RBP10.86□□□□□ -0.67
HMGB3-201ENST00000325307 SEZ6LQ9BYH1 1024 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 LUC7L2Q9Y383 392 aaKnown RBP10.86□□□□□ -0.67
HMGB3-201ENST00000325307 TLR3O15455 904 aaKnown RBP10.85□□□□□ -0.67
HMGB3-201ENST00000325307 NRDCO43847 1150 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 CKBP12277 381 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 SLC9A1P19634 815 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 APBA1Q02410 837 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 KCNMA1Q12791 1236 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 PAK2Q13177 524 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 TMEM192Q8IY95 271 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 ZNF397Q8NF99 534 aaPredicted RBP10.85□□□□□ -0.67
HMGB3-201ENST00000325307 DIS3LQ8TF46 1054 aaKnown RBP10.85□□□□□ -0.67
HMGB3-201ENST00000325307 CRISPLD2Q9H0B8 497 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 GEMIN8Q9NWZ8 242 aaKnown RBP10.85□□□□□ -0.67
HMGB3-201ENST00000325307 CPSF3Q9UKF6 684 aaKnown RBP10.85□□□□□ -0.67
HMGB3-201ENST00000325307 KIAA0100Q14667 2235 aaKnown RBP10.85□□□□□ -0.67
HMGB3-201ENST00000325307 TTC26A0AVF1 554 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 GPR182O15218 404 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 CTIFO43310 598 aaKnown RBP10.85□□□□□ -0.67
HMGB3-201ENST00000325307 PHACTR2O75167 634 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 ACTN1P12814 892 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 KRT9P35527 623 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 FXR1P51114 621 aaKnown RBP eCLIP10.85□□□□□ -0.67
HMGB3-201ENST00000325307 WNT7BP56706 349 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 ENOX2Q16206 610 aaKnown RBP10.85□□□□□ -0.67
HMGB3-201ENST00000325307 TSR1Q2NL82 804 aaKnown RBP10.85□□□□□ -0.67
HMGB3-201ENST00000325307 C1orf220Q5T0J3 134 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 KRT39Q6A163 491 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 CNGA4Q8IV77 575 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 TSC1Q92574 1164 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 ACAP3Q96P50 834 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 TMEM117Q9H0C3 514 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 TMEM8AQ9HCN3 771 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 NLRC4Q9NPP4 1024 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 FAM189A1O60320 539 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 PON1P27169 355 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 CD52P31358 61 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 GJA8P48165 433 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 TFAMQ00059 246 aaKnown RBP10.85□□□□□ -0.67
HMGB3-201ENST00000325307 MGAT3Q09327 533 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 KYAT1Q16773 422 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 TRIM71Q2Q1W2 868 aaKnown RBP10.85□□□□□ -0.67
HMGB3-201ENST00000325307 HES2Q9Y543 173 aa10.85□□□□□ -0.67
HMGB3-201ENST00000325307 GTPBP10A4D1E9 387 aaKnown RBP10.84□□□□□ -0.67
HMGB3-201ENST00000325307 EPHB6O15197 1021 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 CDK7P50613 346 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 YARSP54577 528 aaKnown RBP10.84□□□□□ -0.67
HMGB3-201ENST00000325307 POLR2FP61218 127 aaKnown RBP10.84□□□□□ -0.67
HMGB3-201ENST00000325307 BFSP2Q13515 415 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 SURF1Q15526 300 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 FBXO47Q5MNV8 452 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 FAM126BQ8IXS8 530 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 CGRRF1Q99675 332 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 INTS2Q9H0H0 1204 aaKnown RBP10.84□□□□□ -0.67
HMGB3-201ENST00000325307 AGO3Q9H9G7 860 aaKnown RBP10.84□□□□□ -0.67
HMGB3-201ENST00000325307 MROH7Q68CQ1 1323 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 DCDC2CA8MYV0 355 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 RIOK3O14730 519 aaKnown RBP10.84□□□□□ -0.67
HMGB3-201ENST00000325307 MFAP3LO75121 409 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 CAND2O75155 1236 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 TRIM65Q6PJ69 517 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 SLC39A5Q6ZMH5 540 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 SV2AQ7L0J3 742 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 TC2NQ8N9U0 490 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 NXF3Q9H4D5 531 aaKnown RBP10.84□□□□□ -0.67
HMGB3-201ENST00000325307 SNTG2Q9NY99 539 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 PARP2Q9UGN5 583 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 PADI3Q9ULW8 664 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 ATP11BQ9Y2G3 1177 aa10.84□□□□□ -0.67
HMGB3-201ENST00000325307 IL18RAPO95256 599 aa10.83□□□□□ -0.67
HMGB3-201ENST00000325307 TMEM191BP0C7N4 346 aa10.83□□□□□ -0.67
HMGB3-201ENST00000325307 GTF2H1P32780 548 aa10.83□□□□□ -0.67
HMGB3-201ENST00000325307 RAPGEF1Q13905 1077 aa10.83□□□□□ -0.67
HMGB3-201ENST00000325307 LPIN1Q14693 890 aa10.83□□□□□ -0.67
HMGB3-201ENST00000325307 GPIHBP1Q8IV16 184 aa10.83□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms