RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 FAM153CQ494X1 144 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 ZFYVE27Q5T4F4 411 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 GPAT2Q6NUI2 795 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 ARMCX2Q7L311 632 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 OLIG1Q8TAK6 271 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 KRT35Q92764 455 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 HVCN1Q96D96 273 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 MTMR12Q9C0I1 747 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 CENPHQ9H3R5 247 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 FAM153AQ9UHL3 310 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 SOCS7O14512 581 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 ADCY3O60266 1144 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 TUBBP07437 444 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 CFHP08603 1231 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 EDNRBP24530 442 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 ADCYAP1R1P41586 468 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 LMAN1P49257 510 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 GPC3P51654 580 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 SNRPFP62306 86 aaKnown RBP12.33□□□□□ -0.44
CUX1-202ENST00000292538 TNNC1P63316 161 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 MAPK6Q16659 721 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 CRELD2Q6UXH1 353 aaPredicted RBP12.33□□□□□ -0.44
CUX1-202ENST00000292538 DPH6Q7L8W6 267 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 TMC2Q8TDI7 906 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 FGD4Q96M96 766 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 TRIM7Q9C029 511 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 AKT3Q9Y243 479 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 GLTPD2A6NH11 291 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 SART1O43290 800 aaKnown RBP12.33□□□□□ -0.44
CUX1-202ENST00000292538 CST3P01034 146 aaPredicted RBP12.33□□□□□ -0.44
CUX1-202ENST00000292538 PRKCBP05771 671 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 COMTP21964 271 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 RFX1P22670 979 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 TMEM62Q0P6H9 643 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 TTLL4Q14679 1199 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 IFT20Q8IY31 132 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 GPRC5AQ8NFJ5 357 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 SHC3Q92529 594 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 ALG3Q92685 438 aa12.33□□□□□ -0.44
CUX1-202ENST00000292538 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.33□□□□□ -0.441e-6■■■□□ 15.3
CUX1-202ENST00000292538 NXF1Q9UBU9 619 aaKnown RBP12.33□□□□□ -0.44
CUX1-202ENST00000292538 NOCTQ9UK39 431 aaKnown RBP12.33□□□□□ -0.44
CUX1-202ENST00000292538 RTN2O75298 545 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 VTNP04004 478 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 PLCB4Q15147 1175 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 SLFN12LQ6IEE8 588 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 FMNL3Q8IVF7 1028 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 ZBTB8OSQ8IWT0 167 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 GOLGA6L1Q8N7Z2 621 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 AFG1LQ8WV93 481 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 PBKQ96KB5 322 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 FBXL18Q96ME1 805 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 SYT11Q9BT88 431 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 NIFKQ9BYG3 293 aaKnown RBP12.32□□□□□ -0.44
CUX1-202ENST00000292538 CNOT8Q9UFF9 292 aaKnown RBP12.32□□□□□ -0.44
CUX1-202ENST00000292538 KCNH4Q9UQ05 1017 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 GOLGA6BA6NDN3 693 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 BTBD19C9JJ37 291 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 MAFO75444 373 aaPredicted RBP12.32□□□□□ -0.44
CUX1-202ENST00000292538 GJB6O95452 261 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 WEE2P0C1S8 567 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 RFC5P40937 340 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 ORC1Q13415 861 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 MOGSQ13724 837 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 NCOA4Q13772 614 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 ZNF564Q8TBZ8 553 aaPredicted RBP12.32□□□□□ -0.44
CUX1-202ENST00000292538 CYFIP2Q96F07 1278 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 RNPC3Q96LT9 517 aaKnown RBP12.32□□□□□ -0.44
CUX1-202ENST00000292538 RUFY1Q96T51 708 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 ACBD3Q9H3P7 528 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 APOBEC3GQ9HC16 384 aaKnown RBP12.32□□□□□ -0.44
CUX1-202ENST00000292538 RNF19AQ9NV58 838 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 HPCAL4Q9UM19 191 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 KIAA1217Q5T5P2 1943 aa12.32□□□□□ -0.44
CUX1-202ENST00000292538 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.31□□□□□ -0.44
CUX1-202ENST00000292538 BTNL10A8MVZ5 291 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 TTI1O43156 1089 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 THAP12O43422 761 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 RTP1P59025 263 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 CDR2Q01850 454 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 GRM1Q13255 1194 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 ZNF568Q3ZCX4 644 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 CASKIN2Q8WXE0 1202 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 BBXQ8WY36 941 aaPredicted RBP12.31□□□□□ -0.44
CUX1-202ENST00000292538 MRPL4Q9BYD3 311 aaKnown RBP12.31□□□□□ -0.44
CUX1-202ENST00000292538 IMPG2Q9BZV3 1241 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 RNF14Q9UBS8 474 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 INTUQ9ULD6 942 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 USTQ9Y2C2 406 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 IGKV6D-21A0A0A0MT36 114 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 A0A0B4J269 797 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 MAPK13O15264 365 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 VNN1O95497 513 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 FGFR4P22455 802 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 ANXA13P27216 316 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 CDR1P51861 262 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 NOP14P78316 857 aaKnown RBP12.31□□□□□ -0.44
CUX1-202ENST00000292538 TRPC3Q13507 836 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 PSMD6Q15008 389 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 TARBP2Q15633 366 aaKnown RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms