RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 SLIT1O75093 1534 aa13.53□□□□□ -0.24
PTCD1-201ENST00000292478 PPP1R3GB7ZBB8 358 aa13.53□□□□□ -0.24
PTCD1-201ENST00000292478 CLGNO14967 610 aa13.53□□□□□ -0.24
PTCD1-201ENST00000292478 APOEP02649 317 aa13.53□□□□□ -0.24
PTCD1-201ENST00000292478 NR3C2P08235 984 aa13.53□□□□□ -0.24
PTCD1-201ENST00000292478 TXNP10599 105 aaKnown RBP13.53□□□□□ -0.24
PTCD1-201ENST00000292478 SLC12A1Q13621 1099 aa13.53□□□□□ -0.24
PTCD1-201ENST00000292478 BAATQ14032 418 aaPredicted RBP13.53□□□□□ -0.24
PTCD1-201ENST00000292478 KIF19Q2TAC6 998 aa13.53□□□□□ -0.24
PTCD1-201ENST00000292478 CCNI2Q6ZMN8 369 aaPredicted RBP13.53□□□□□ -0.24
PTCD1-201ENST00000292478 RASSF3Q86WH2 238 aa13.53□□□□□ -0.24
PTCD1-201ENST00000292478 SH3TC2Q8TF17 1288 aa13.53□□□□□ -0.24
PTCD1-201ENST00000292478 MOV10L1Q9BXT6 1211 aaKnown RBP13.53□□□□□ -0.24
PTCD1-201ENST00000292478 MAP3K20Q9NYL2 800 aaKnown RBP13.53□□□□□ -0.24
PTCD1-201ENST00000292478 RECQLP46063 649 aaPredicted RBP13.53□□□□□ -0.24
PTCD1-201ENST00000292478 AGBL2Q5U5Z8 902 aa13.53□□□□□ -0.24
PTCD1-201ENST00000292478 MTHFD1LQ6UB35 978 aa13.53□□□□□ -0.24
PTCD1-201ENST00000292478 NUDCD3Q8IVD9 361 aa13.53□□□□□ -0.24
PTCD1-201ENST00000292478 TEX2Q8IWB9 1127 aa13.53□□□□□ -0.24
PTCD1-201ENST00000292478 ELMOD1Q8N336 334 aa13.53□□□□□ -0.24
PTCD1-201ENST00000292478 ALKBH8Q96BT7 664 aaKnown RBP13.53□□□□□ -0.24
PTCD1-201ENST00000292478 TSPYL2Q9H2G4 693 aaPredicted RBP13.53□□□□□ -0.24
PTCD1-201ENST00000292478 SLC25A27O95847 323 aa13.52□□□□□ -0.24
PTCD1-201ENST00000292478 EIF3EP60228 445 aaKnown RBP13.52□□□□□ -0.24
PTCD1-201ENST00000292478 IL1RL1Q01638 556 aa13.52□□□□□ -0.24
PTCD1-201ENST00000292478 CHST13Q8NET6 341 aa13.52□□□□□ -0.24
PTCD1-201ENST00000292478 FGD4Q96M96 766 aa13.52□□□□□ -0.24
PTCD1-201ENST00000292478 CYTH2Q99418 400 aa13.52□□□□□ -0.24
PTCD1-201ENST00000292478 RPS12P25398 132 aaKnown RBP13.52□□□□□ -0.25
PTCD1-201ENST00000292478 TROAPQ12815 778 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 PDCD2Q16342 344 aaPredicted RBP13.52□□□□□ -0.25
PTCD1-201ENST00000292478 AGPAT5Q9NUQ2 364 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 SPATA31A5Q5VU36 1347 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 SPATA31A7Q8IWB4 1347 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 ADORA2BP29275 332 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 AP1B1Q10567 949 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 HPS3Q969F9 1004 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 INPP5FQ9Y2H2 1132 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 PCDHB2Q9Y5E7 798 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 MYBP10242 640 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 MMGT1Q8N4V1 131 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 PPP1R2P1Q96PQ5 205 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 EPAS1Q99814 870 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 CENPKQ9BS16 269 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 DNAJC5Q9H3Z4 198 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 LMCD1Q9NZU5 365 aa13.52□□□□□ -0.25
PTCD1-201ENST00000292478 TPX2Q9ULW0 747 aaKnown RBP13.52□□□□□ -0.25
PTCD1-201ENST00000292478 G3BP2Q9UN86 482 aaKnown RBP13.52□□□□□ -0.25
PTCD1-201ENST00000292478 GYPCP04921 128 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 NCOA4Q13772 614 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 EMC2Q15006 297 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 RAD9BQ6WBX8 426 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 PARD3BQ8TEW8 1205 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 IGSF9BQ9UPX0 1349 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 MMP14P50281 582 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 MAPRE2Q15555 327 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 RNF219Q5W0B1 726 aaPredicted RBP13.51□□□□□ -0.25
PTCD1-201ENST00000292478 C4orf22Q6V702 233 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 KATNAL1Q9BW62 490 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 SPATS2LQ9NUQ6 558 aaKnown RBP13.51□□□□□ -0.25
PTCD1-201ENST00000292478 ITPK1Q13572 414 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 MICALL2Q8IY33 904 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 MED15Q96RN5 788 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 ROPN1BQ9BZX4 212 aaPredicted RBP13.51□□□□□ -0.25
PTCD1-201ENST00000292478 SUDS3Q9H7L9 328 aaPredicted RBP13.51□□□□□ -0.25
PTCD1-201ENST00000292478 ROPN1Q9HAT0 212 aaPredicted RBP13.51□□□□□ -0.25
PTCD1-201ENST00000292478 SP110Q9HB58 689 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 EXTL3O43909 919 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 SPAG6O75602 509 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 RALAP11233 206 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 HSD17B4P51659 736 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 NOP14P78316 857 aaKnown RBP13.51□□□□□ -0.25
PTCD1-201ENST00000292478 CENPCQ03188 943 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 PTPAQ15257 358 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 KLHDC7AQ5VTJ3 777 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 BTBD8Q5XKL5 378 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 RNF181Q9P0P0 153 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 L3MBTL1Q9Y468 752 aa13.51□□□□□ -0.25
PTCD1-201ENST00000292478 GH1P01241 217 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 MDH1P40925 334 aaKnown RBP13.5□□□□□ -0.25
PTCD1-201ENST00000292478 PDE1CQ14123 709 aaPredicted RBP13.5□□□□□ -0.25
PTCD1-201ENST00000292478 RBBP8NLQ8NC74 664 aaPredicted RBP13.5□□□□□ -0.25
PTCD1-201ENST00000292478 KRT35Q92764 455 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 GPRASP2Q96D09 838 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 DDX50Q9BQ39 737 aaKnown RBP13.5□□□□□ -0.25
PTCD1-201ENST00000292478 FHOD1Q9Y613 1164 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 CDH16O75309 829 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 PPP1R37O75864 691 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 GRAMD1BQ3KR37 738 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 WDR72Q3MJ13 1102 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 KIFC3Q9BVG8 833 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 WWP1Q9H0M0 922 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 SENP2Q9HC62 589 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 GTSE1Q9NYZ3 720 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 ADGRB1O14514 1584 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 GAS2O43903 313 aaKnown RBP13.5□□□□□ -0.25
PTCD1-201ENST00000292478 CD4P01730 458 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 CHGBP05060 677 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 SERPINB9P50453 376 aa13.5□□□□□ -0.25
PTCD1-201ENST00000292478 USP49Q70CQ1 688 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms