RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 GPRC5DQ9NZD1 345 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 EXTL3O43909 919 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 OATP04181 439 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 EDN1P05305 212 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 TNNI1P19237 187 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 NR1D1P20393 614 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 GLRA2P23416 452 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 C2CD6Q53TS8 623 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 DUPD1Q68J44 220 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 TTC27Q6P3X3 843 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 C15orf39Q6ZRI6 1047 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 ERP44Q9BS26 406 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 RAB17Q9H0T7 212 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 TMBIM4Q9HC24 238 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 LRRC4CQ9HCJ2 640 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 C1orf112Q9NSG2 853 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 CNOT8Q9UFF9 292 aaKnown RBP21.53■■□□□ 1.04
VPS53-201ENST00000291074 STAM2O75886 525 aa21.52■■□□□ 1.04
VPS53-201ENST00000291074 ACAD10Q6JQN1 1059 aa21.52■■□□□ 1.04
VPS53-201ENST00000291074 LLGL2Q6P1M3 1020 aa21.52■■□□□ 1.04
VPS53-201ENST00000291074 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.52■■□□□ 1.04
VPS53-201ENST00000291074 TRIM7Q9C029 511 aa21.52■■□□□ 1.04
VPS53-201ENST00000291074 SNX24Q9Y343 169 aa21.52■■□□□ 1.04
VPS53-201ENST00000291074 RRP15Q9Y3B9 282 aaKnown RBP21.52■■□□□ 1.04
VPS53-201ENST00000291074 PHF2O75151 1096 aa21.52■■□□□ 1.04
VPS53-201ENST00000291074 IRX5P78411 483 aaPredicted RBP21.52■■□□□ 1.04
VPS53-201ENST00000291074 GUCY1A3Q02108 690 aa21.52■■□□□ 1.04
VPS53-201ENST00000291074 GCNT1Q02742 428 aa21.52■■□□□ 1.04
VPS53-201ENST00000291074 CLEC16AQ2KHT3 1053 aa21.52■■□□□ 1.04
VPS53-201ENST00000291074 TDRD10Q5VZ19 366 aaKnown RBP21.52■■□□□ 1.04
VPS53-201ENST00000291074 LRIG3Q6UXM1 1119 aa21.52■■□□□ 1.04
VPS53-201ENST00000291074 KDM7AQ6ZMT4 941 aa21.52■■□□□ 1.04
VPS53-201ENST00000291074 SRLQ86TD4 932 aa21.52■■□□□ 1.04
VPS53-201ENST00000291074 WNT8AQ9H1J5 351 aa21.52■■□□□ 1.04
VPS53-201ENST00000291074 ANKFY1Q9P2R3 1169 aa21.52■■□□□ 1.04
VPS53-201ENST00000291074 AGO2Q9UKV8 859 aaKnown RBP21.52■■□□□ 1.04
VPS53-201ENST00000291074 MAFBQ9Y5Q3 323 aaPredicted RBP21.52■■□□□ 1.04
VPS53-201ENST00000291074 ANKRD65E5RJM6 399 aa21.52■■□□□ 1.03
VPS53-201ENST00000291074 MYO1FO00160 1098 aa21.52■■□□□ 1.03
VPS53-201ENST00000291074 HLA-DRAP01903 254 aa21.52■■□□□ 1.03
VPS53-201ENST00000291074 STRN3Q13033 797 aa21.52■■□□□ 1.03
VPS53-201ENST00000291074 SEL1L2Q5TEA6 688 aa21.52■■□□□ 1.03
VPS53-201ENST00000291074 NLGN2Q8NFZ4 835 aa21.52■■□□□ 1.03
VPS53-201ENST00000291074 PSPC1Q8WXF1 523 aaKnown RBP21.52■■□□□ 1.03
VPS53-201ENST00000291074 MAGOHBQ96A72 148 aaKnown RBP21.52■■□□□ 1.03
VPS53-201ENST00000291074 FNBP1Q96RU3 617 aa21.52■■□□□ 1.03
VPS53-201ENST00000291074 FMO2Q99518 471 aa21.52■■□□□ 1.03
VPS53-201ENST00000291074 SIP14410 1827 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 HPDP32754 393 aaPredicted RBP21.51■■□□□ 1.03
VPS53-201ENST00000291074 PTGIRP43119 386 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 BIRC3Q13489 604 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 VGLL4Q14135 290 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 SEZ6Q53EL9 994 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 CRELD2Q6UXH1 353 aaPredicted RBP21.51■■□□□ 1.03
VPS53-201ENST00000291074 PLCD3Q8N3E9 789 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 BCAS4Q8TDM0 211 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 TARS2Q9BW92 718 aaKnown RBP21.51■■□□□ 1.03
VPS53-201ENST00000291074 PORCNQ9H237 461 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 DHX33Q9H6R0 707 aaKnown RBP21.51■■□□□ 1.03
VPS53-201ENST00000291074 ZDHHC18Q9NUE0 388 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 BTBD7Q9P203 1132 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 ATP8A1Q9Y2Q0 1164 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 SNCAIPQ9Y6H5 919 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 USP2O75604 605 aaPredicted RBP21.51■■□□□ 1.03
VPS53-201ENST00000291074 UBA1P22314 1058 aaKnown RBP21.51■■□□□ 1.03
VPS53-201ENST00000291074 PIK3CAP42336 1068 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 PSMD6Q15008 389 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 NOL9Q5SY16 702 aaKnown RBP21.51■■□□□ 1.03
VPS53-201ENST00000291074 CPA5Q8WXQ8 436 aa21.51■■□□□ 1.03
VPS53-201ENST00000291074 GOLGA6L10A6NI86 522 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 ZEB2O60315 1214 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 MYZAPP0CAP1 466 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 SSTR3P32745 418 aaPredicted RBP21.5■■□□□ 1.03
VPS53-201ENST00000291074 CCT5P48643 541 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 ALDH5A1P51649 535 aaPredicted RBP21.5■■□□□ 1.03
VPS53-201ENST00000291074 DHX34Q14147 1143 aaKnown RBP21.5■■□□□ 1.03
VPS53-201ENST00000291074 ZACNQ401N2 412 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 SCARA3Q6AZY7 606 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 DEPTORQ8TB45 409 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 UVRAGQ9P2Y5 699 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 HMGB1P1B2RPK0 211 aaPredicted RBP21.5■■□□□ 1.03
VPS53-201ENST00000291074 KIAA0391O15091 583 aaKnown RBP21.5■■□□□ 1.03
VPS53-201ENST00000291074 ATG7O95352 703 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 VNN1O95497 513 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 C4BPAP04003 597 aaKnown RBP21.5■■□□□ 1.03
VPS53-201ENST00000291074 HARSP12081 509 aaKnown RBP21.5■■□□□ 1.03
VPS53-201ENST00000291074 CTNNA2P26232 953 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 PLTPP55058 493 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 PPP2R5EQ16537 467 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 PCYT2Q99447 389 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 R3HDMLQ9H3Y0 253 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 PCDHA3Q9Y5H8 950 aa21.5■■□□□ 1.03
VPS53-201ENST00000291074 H0YCG3 227 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 K7ERI5 159 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 TULP2O00295 520 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 CFHP08603 1231 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 ICAM3P32942 547 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 MKRN4PQ13434 485 aaPredicted RBP21.49■■□□□ 1.03
VPS53-201ENST00000291074 ZDHHC24Q6UX98 284 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 EEPD1Q7L9B9 569 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms