RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CREB1P16220 341 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 PIK3CAP42336 1068 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 MAGEA9P43362 315 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 POU5F1Q01860 360 aaKnown RBP17.81■□□□□ 0.44
VPS54-201ENST00000272322 TMEM132AQ24JP5 1023 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 SLC9A9Q8IVB4 645 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 AGBL3Q8NEM8 1001 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 CAMKK2Q96RR4 588 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 KIAA1683Q9H0B3 1180 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 C1orf112Q9NSG2 853 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 CTNNAL1Q9UBT7 734 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 PCDHB4Q9Y5E5 795 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 PTPRJQ12913 1337 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 GJB1P08034 283 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 TADA2BQ86TJ2 420 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 ANKRD42Q8N9B4 389 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 IFT74Q96LB3 600 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 A1CFQ9NQ94 594 aaKnown RBP17.81■□□□□ 0.44
VPS54-201ENST00000272322 FBXO40Q9UH90 709 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 EXOC7Q9UPT5 735 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 GREB1LQ9C091 1923 aaPredicted RBP17.8■□□□□ 0.44
VPS54-201ENST00000272322 KRT76Q01546 638 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 SF3B2Q13435 895 aaKnown RBP17.8■□□□□ 0.44
VPS54-201ENST00000272322 VSIG10LQ86VR7 867 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 KAT2BQ92831 832 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 TTC7AQ9ULT0 858 aaPredicted RBP17.8■□□□□ 0.44
VPS54-201ENST00000272322 CD2APQ9Y5K6 639 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 BACE1P56817 501 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 DALRD3Q5D0E6 543 aaKnown RBP17.8■□□□□ 0.44
VPS54-201ENST00000272322 DUPD1Q68J44 220 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 RUFY4Q6ZNE9 571 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 RAPGEF5Q92565 580 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 THOC1Q96FV9 657 aaKnown RBP17.8■□□□□ 0.44
VPS54-201ENST00000272322 PSMD1Q99460 953 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 MTFR1LQ9H019 292 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 C10orf88Q9H8K7 445 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 SLC9A2Q9UBY0 812 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 R3HDM2Q9Y2K5 976 aaKnown RBP17.8■□□□□ 0.44
VPS54-201ENST00000272322 NCANO14594 1321 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 RGS16O15492 202 aaPredicted RBP17.8■□□□□ 0.44
VPS54-201ENST00000272322 KRT10P13645 584 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 CCND2P30279 289 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 PPP2R2AP63151 447 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 CYP24A1Q07973 514 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 SLC13A5Q86YT5 568 aaPredicted RBP17.8■□□□□ 0.44
VPS54-201ENST00000272322 MREGQ8N565 214 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 NEK9Q8TD19 979 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 LPAR1Q92633 364 aa17.8■□□□□ 0.44
VPS54-201ENST00000272322 ATF7P17544 494 aaPredicted RBP17.79■□□□□ 0.44
VPS54-201ENST00000272322 SKOR1P84550 965 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 ZDHHC24Q6UX98 284 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 B4GALNT4Q76KP1 1039 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 LRRC71Q8N4P6 559 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 ZNF280CQ8ND82 737 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 OR5B17Q8NGF7 314 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 SHC3Q92529 594 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 NAP1L3Q99457 506 aaPredicted RBP17.79■□□□□ 0.44
VPS54-201ENST00000272322 TMEM8AQ9HCN3 771 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 KCNK9Q9NPC2 374 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 RASAL2Q9UJF2 1139 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 K7ERI5 159 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 TBC1D12O60347 775 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 HLA-DRAP01903 254 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 VIMP08670 466 aaKnown RBP17.79■□□□□ 0.44
VPS54-201ENST00000272322 TCF4P15884 667 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 RWDD2BP57060 319 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 SPRED3Q2MJR0 410 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 WDR44Q5JSH3 913 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 MMS22LQ6ZRQ5 1243 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 GPD1LQ8N335 351 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 CYP26B1Q9NR63 512 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 PGAP2Q9UHJ9 254 aa17.79■□□□□ 0.44
VPS54-201ENST00000272322 PHF2O75151 1096 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 PEX5P50542 639 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 JAK3P52333 1124 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 CDR2Q01850 454 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 CALCOCO2Q13137 446 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 TNFAIP1Q13829 316 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 KYNUQ16719 465 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 BRDTQ58F21 947 aaPredicted RBP17.78■□□□□ 0.44
VPS54-201ENST00000272322 SYCP2LQ5T4T6 812 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 CYP4F22Q6NT55 531 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 TAS1R3Q7RTX0 852 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 MAP4K3Q8IVH8 894 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 DEPTORQ8TB45 409 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 NSUN6Q8TEA1 469 aaKnown RBP17.78■□□□□ 0.44
VPS54-201ENST00000272322 CABS1Q96KC9 395 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 MTUS1Q9ULD2 1270 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 GOLGA6L7A0A1B0GV03 622 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 GSTTP1A0A1W2PQM5 241 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 CHN1P15882 459 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 NSFP46459 744 aaKnown RBP17.78■□□□□ 0.44
VPS54-201ENST00000272322 KRT17Q04695 432 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 GSTA5Q7RTV2 222 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 RUBCNQ92622 972 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 ATP6V0A1Q93050 837 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 RPTORQ8N122 1335 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 CHKAP35790 457 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 COILP38432 576 aaPredicted RBP17.78■□□□□ 0.44
VPS54-201ENST00000272322 ADCY8P40145 1251 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms