RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ABCB4P21439 1286 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 PSMD6Q15008 389 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 FSCN1Q16658 493 aaKnown RBP17.81■□□□□ 0.44
USP4-201ENST00000265560 ZPBP2Q6X784 338 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 SOCS4Q8WXH5 440 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 MAP7D2Q96T17 732 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 CNTNAP2Q9UHC6 1331 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 MAGEB2O15479 319 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 N4BP1O75113 896 aaKnown RBP17.81■□□□□ 0.44
USP4-201ENST00000265560 PHACTR2O75167 634 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 KRT5P13647 590 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 PIK3CAP42336 1068 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 PHKA2P46019 1235 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 HELQQ8TDG4 1101 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 SECISBP2LQ93073 1101 aaKnown RBP17.81■□□□□ 0.44
USP4-201ENST00000265560 NAGPAQ9UK23 515 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 CTAGE9A4FU28 777 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 NCK2O43639 380 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 F2P00734 622 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 ARF4P18085 180 aaPredicted RBP17.81■□□□□ 0.44
USP4-201ENST00000265560 MSL3Q8N5Y2 521 aaKnown RBP17.81■□□□□ 0.44
USP4-201ENST00000265560 LINC01465Q8N7H1 131 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 CDT1Q9H211 546 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 CXCL16Q9H2A7 254 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 LCA5LO95447 670 aa17.8■□□□□ 0.44
USP4-201ENST00000265560 C4BPAP04003 597 aaKnown RBP17.8■□□□□ 0.44
USP4-201ENST00000265560 CYP2C9P11712 490 aa17.8■□□□□ 0.44
USP4-201ENST00000265560 NOGQ13253 232 aa17.8■□□□□ 0.44
USP4-201ENST00000265560 EXOC8Q8IYI6 725 aa17.8■□□□□ 0.44
USP4-201ENST00000265560 NT5C1BQ96P26 610 aa17.8■□□□□ 0.44
USP4-201ENST00000265560 C2orf40Q9H1Z8 148 aa17.8■□□□□ 0.44
USP4-201ENST00000265560 FBXL5Q9UKA1 691 aa17.8■□□□□ 0.44
USP4-201ENST00000265560 FERP16591 822 aa17.8■□□□□ 0.44
USP4-201ENST00000265560 CXCR5P32302 372 aa17.8■□□□□ 0.44
USP4-201ENST00000265560 GPC3P51654 580 aa17.8■□□□□ 0.44
USP4-201ENST00000265560 MPZL3Q6UWV2 235 aa17.8■□□□□ 0.44
USP4-201ENST00000265560 CAPZA3Q96KX2 299 aa17.8■□□□□ 0.44
USP4-201ENST00000265560 HES2Q9Y543 173 aa17.8■□□□□ 0.44
USP4-201ENST00000265560 OGTO15294 1046 aa17.79■□□□□ 0.44
USP4-201ENST00000265560 MYCP01106 439 aaPredicted RBP17.79■□□□□ 0.44
USP4-201ENST00000265560 HOXD8P13378 290 aaPredicted RBP17.79■□□□□ 0.44
USP4-201ENST00000265560 CCND3P30281 292 aaPredicted RBP17.79■□□□□ 0.44
USP4-201ENST00000265560 PSEN2P49810 448 aa17.79■□□□□ 0.44
USP4-201ENST00000265560 ZACNQ401N2 412 aa17.79■□□□□ 0.44
USP4-201ENST00000265560 TSHZ1Q6ZSZ6 1077 aa17.79■□□□□ 0.44
USP4-201ENST00000265560 USP37Q86T82 979 aa17.79■□□□□ 0.44
USP4-201ENST00000265560 NAPGQ99747 312 aaPredicted RBP17.79■□□□□ 0.44
USP4-201ENST00000265560 L2HGDHQ9H9P8 463 aa17.79■□□□□ 0.44
USP4-201ENST00000265560 APOBEC3GQ9HC16 384 aaKnown RBP17.79■□□□□ 0.44
USP4-201ENST00000265560 KIAA1586Q9HCI6 787 aa17.79■□□□□ 0.44
USP4-201ENST00000265560 PTPRHQ9HD43 1115 aa17.79■□□□□ 0.44
USP4-201ENST00000265560 PACSIN2Q9UNF0 486 aaPredicted RBP17.79■□□□□ 0.44
USP4-201ENST00000265560 TRIP11Q15643 1979 aa17.79■□□□□ 0.44
USP4-201ENST00000265560 ZNF185O15231 689 aa17.79■□□□□ 0.44
USP4-201ENST00000265560 GUCY2FP51841 1108 aa17.79■□□□□ 0.44
USP4-201ENST00000265560 AMHR2Q16671 573 aa17.79■□□□□ 0.44
USP4-201ENST00000265560 ERCC6LQ2NKX8 1250 aa17.79■□□□□ 0.44
USP4-201ENST00000265560 OLIG1Q8TAK6 271 aa17.79■□□□□ 0.44
USP4-201ENST00000265560 P4HA2O15460 535 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 SLU7O95391 586 aaKnown RBP17.78■□□□□ 0.44
USP4-201ENST00000265560 LDHAP00338 332 aaKnown RBP17.78■□□□□ 0.44
USP4-201ENST00000265560 CACNB2Q08289 660 aaPredicted RBP17.78■□□□□ 0.44
USP4-201ENST00000265560 FAM47CQ5HY64 1035 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 TSKSQ9UJT2 592 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 COQ4Q9Y3A0 265 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 PPME1Q9Y570 386 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 SIP14410 1827 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 ASAP2O43150 1006 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 IBSPP21815 317 aaPredicted RBP17.78■□□□□ 0.44
USP4-201ENST00000265560 PRKCIP41743 596 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 MCL1Q07820 350 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 C15orf39Q6ZRI6 1047 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 EFCAB13Q8IY85 973 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 TMEM40Q8WWA1 233 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 MEFVO15553 781 aaPredicted RBP17.78■□□□□ 0.44
USP4-201ENST00000265560 ERLIN2O94905 339 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 KRT19P08727 400 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 AKR1A1P14550 325 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 TNFAIP3P21580 790 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 NOP2P46087 812 aaKnown RBP17.78■□□□□ 0.44
USP4-201ENST00000265560 CPT1AP50416 773 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 SP3Q02447 781 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 NOP9Q86U38 636 aaKnown RBP17.78■□□□□ 0.44
USP4-201ENST00000265560 CD99L2Q8TCZ2 262 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 CPSF3Q9UKF6 684 aaKnown RBP17.78■□□□□ 0.44
USP4-201ENST00000265560 NUB1Q9Y5A7 615 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 MRFAP1Q9Y605 127 aa17.78■□□□□ 0.44
USP4-201ENST00000265560 FTCDO95954 541 aa17.77■□□□□ 0.44
USP4-201ENST00000265560 ABCD1P33897 745 aa17.77■□□□□ 0.44
USP4-201ENST00000265560 SCARA5Q6ZMJ2 495 aa17.77■□□□□ 0.44
USP4-201ENST00000265560 PHLDB2Q86SQ0 1253 aa17.77■□□□□ 0.44
USP4-201ENST00000265560 BRSK2Q8IWQ3 736 aa17.77■□□□□ 0.44
USP4-201ENST00000265560 RPUSD2Q8IZ73 545 aaKnown RBP17.77■□□□□ 0.44
USP4-201ENST00000265560 PDZD7Q9H5P4 517 aa17.77■□□□□ 0.44
USP4-201ENST00000265560 STAG3L1P0CL83 205 aa17.77■□□□□ 0.43
USP4-201ENST00000265560 MYL6P60660 151 aa17.77■□□□□ 0.43
USP4-201ENST00000265560 NCOA4Q13772 614 aa17.77■□□□□ 0.43
USP4-201ENST00000265560 ZNF394Q53GI3 561 aa17.77■□□□□ 0.43
USP4-201ENST00000265560 C2CD6Q53TS8 623 aa17.77■□□□□ 0.43
USP4-201ENST00000265560 MNS1Q8NEH6 495 aa17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms