RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 PPP2R5CQ13362 524 aa10.77□□□□□ -0.69
LIG3-201ENST00000262327 DGKZQ13574 1117 aa10.77□□□□□ -0.69
LIG3-201ENST00000262327 AUHQ13825 339 aaKnown RBP10.77□□□□□ -0.69
LIG3-201ENST00000262327 MIER3Q7Z3K6 550 aa10.77□□□□□ -0.69
LIG3-201ENST00000262327 CPXCR1Q8N123 301 aa10.77□□□□□ -0.69
LIG3-201ENST00000262327 GMCL1P1Q8NEA9 526 aa10.77□□□□□ -0.69
LIG3-201ENST00000262327 EPS8L1Q8TE68 723 aa10.77□□□□□ -0.69
LIG3-201ENST00000262327 AGBL1Q96MI9 1066 aa10.77□□□□□ -0.69
LIG3-201ENST00000262327 HEMGNQ9BXL5 484 aa10.77□□□□□ -0.69
LIG3-201ENST00000262327 ADAM33Q9BZ11 813 aa10.77□□□□□ -0.69
LIG3-201ENST00000262327 TMEM117Q9H0C3 514 aa10.77□□□□□ -0.69
LIG3-201ENST00000262327 CNOT10Q9H9A5 744 aaKnown RBP10.77□□□□□ -0.69
LIG3-201ENST00000262327 ACTR5Q9H9F9 607 aaPredicted RBP10.77□□□□□ -0.69
LIG3-201ENST00000262327 MTRF1LQ9UGC7 380 aaKnown RBP10.77□□□□□ -0.69
LIG3-201ENST00000262327 ASIC3Q9UHC3 531 aa10.77□□□□□ -0.69
LIG3-201ENST00000262327 SYNGAP1Q96PV0 1343 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 SLC26A4O43511 780 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 SORBS3O60504 671 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 GH1P01241 217 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 NUDT17P0C025 328 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 ITGB5P18084 799 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 CHRNA3P32297 505 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 MXI1P50539 228 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 ZNF131P52739 623 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 RASA3Q14644 834 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 PLA2G4FQ68DD2 849 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 LMBRD2Q68DH5 695 aaPredicted RBP10.76□□□□□ -0.69
LIG3-201ENST00000262327 RNF207Q6ZRF8 634 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 STXBP4Q6ZWJ1 553 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 SAMD7Q7Z3H4 446 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 SLC13A5Q86YT5 568 aaPredicted RBP10.76□□□□□ -0.69
LIG3-201ENST00000262327 HERPUD2Q9BSE4 406 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 TEKT3Q9BXF9 490 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 TMEM39BQ9GZU3 492 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 CHST7Q9NS84 486 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 GINM1Q9NU53 330 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 FGFR1OP2Q9NVK5 253 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 RNF181Q9P0P0 153 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 AGAP1Q9UPQ3 857 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 EXOC3L1Q86VI1 746 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 APOBEC3FQ8IUX4 373 aaKnown RBP10.76□□□□□ -0.69
LIG3-201ENST00000262327 KIF2BQ8N4N8 673 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 CDC42EP4Q9H3Q1 356 aaKnown RBP10.76□□□□□ -0.69
LIG3-201ENST00000262327 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.76□□□□□ -0.69
LIG3-201ENST00000262327 SAMD15Q9P1V8 674 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 GGA2Q9UJY4 613 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 PCDHA3Q9Y5H8 950 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 PFASO15067 1338 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 TCP11X1B4DZS4 312 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 O00370 1275 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 RTN2O75298 545 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 KRT5P13647 590 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 CTNNA2P26232 953 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 FMO1Q01740 532 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 KYNUQ16719 465 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 HP1BP3Q5SSJ5 553 aaPredicted RBP10.76□□□□□ -0.69
LIG3-201ENST00000262327 N4BP2L2Q92802 583 aaPredicted RBP10.76□□□□□ -0.69
LIG3-201ENST00000262327 COL20A1Q9P218 1284 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 HACL1Q9UJ83 578 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 L3MBTL1Q9Y468 752 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 ZHX2Q9Y6X8 837 aa10.76□□□□□ -0.69
LIG3-201ENST00000262327 SRRM3A6NNA2 597 aaPredicted RBP10.75□□□□□ -0.69
LIG3-201ENST00000262327 EGFRP00533 1210 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 KRT17Q04695 432 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 CETN1Q12798 172 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 HAUS6Q7Z4H7 955 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 ANKS4BQ8N8V4 417 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 ITFG2Q969R8 447 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 PGM2Q96G03 612 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 KCNH7Q9NS40 1196 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 DIS3Q9Y2L1 958 aaKnown RBP10.75□□□□□ -0.69
LIG3-201ENST00000262327 PPP2R3BQ9Y5P8 575 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 TTC36A6NLP5 189 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 NFIBO00712 420 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 ELF3P78545 371 aaPredicted RBP10.75□□□□□ -0.69
LIG3-201ENST00000262327 SPP2Q13103 211 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 CALCOCO2Q13137 446 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 DRP2Q13474 957 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 NEDD9Q14511 834 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 SIX1Q15475 284 aaPredicted RBP10.75□□□□□ -0.69
LIG3-201ENST00000262327 CNGA2Q16280 664 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 UGCGQ16739 394 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 ACCSLQ4AC99 568 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 SGO2Q562F6 1265 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 C6orf118Q5T5N4 469 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 FAM102BQ5T8I3 360 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 C9orf131Q5VYM1 1079 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 INTS8Q75QN2 995 aaKnown RBP10.75□□□□□ -0.69
LIG3-201ENST00000262327 LDHDQ86WU2 507 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 XXYLT1Q8NBI6 393 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 ARHGEF2Q92974 986 aaKnown RBP10.75□□□□□ -0.69
LIG3-201ENST00000262327 MRRFQ96E11 262 aaKnown RBP10.75□□□□□ -0.69
LIG3-201ENST00000262327 TEPSINQ96N21 525 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 AAASQ9NRG9 546 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 LARSQ9P2J5 1176 aaKnown RBP10.75□□□□□ -0.69
LIG3-201ENST00000262327 SEL1LQ9UBV2 794 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 NOCTQ9UK39 431 aaKnown RBP10.75□□□□□ -0.69
LIG3-201ENST00000262327 TRIM33Q9UPN9 1127 aa10.75□□□□□ -0.69
LIG3-201ENST00000262327 PCNTO95613 3336 aa10.74□□□□□ -0.69
LIG3-201ENST00000262327 TMEM120BA0PK00 339 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms