RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 MRPS6P82932 125 aaKnown RBP9.38□□□□□ -0.91
VPS4B-201ENST00000238497 C2orf54Q08AI8 447 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 BMS1Q14692 1282 aaKnown RBP9.38□□□□□ -0.91
VPS4B-201ENST00000238497 EXOC3L4Q17RC7 722 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 KIZQ2M2Z5 673 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 PLPPR4Q7Z2D5 763 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 SPRED2Q7Z698 418 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 SRGAP1Q7Z6B7 1085 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 TEX2Q8IWB9 1127 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 KRT222Q8N1A0 295 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 NRBP2Q9NSY0 501 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 ITIH6Q6UXX5 1313 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 A0A1W2PQC6 194 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 DHX15O43143 795 aaKnown RBP9.38□□□□□ -0.91
VPS4B-201ENST00000238497 AKAP3O75969 853 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 GFPT2O94808 682 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 CHRNA1P02708 482 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 VTNP04004 478 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 NR3C1P04150 777 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 PPP1R2P41236 205 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 ARHGAP25P42331 645 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 SLC12A3P55017 1021 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 PEX3P56589 373 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 PSMD2Q13200 908 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 TCTN1Q2MV58 587 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 ADAT2Q7Z6V5 191 aaKnown RBP9.38□□□□□ -0.91
VPS4B-201ENST00000238497 SMAP1Q8IYB5 467 aaPredicted RBP9.38□□□□□ -0.91
VPS4B-201ENST00000238497 RNF169Q8NCN4 708 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 LENG9Q96B70 501 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 MMS19Q96T76 1030 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 PARVGQ9HBI0 331 aa9.38□□□□□ -0.91
VPS4B-201ENST00000238497 WRAP73Q9P2S5 460 aaPredicted RBP9.38□□□□□ -0.91
VPS4B-201ENST00000238497 PRKCEQ02156 737 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 EHHADHQ08426 723 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 PAK2Q13177 524 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 ASIC2Q16515 512 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 LRRC55Q6ZSA7 311 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 CEP112Q8N8E3 955 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 BICD1Q96G01 975 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 PACSIN1Q9BY11 444 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 OGFRQ9NZT2 677 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 CAPN6Q9Y6Q1 641 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 TMEM110-MUSTN1A8MSY1 372 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 SLC16A4O15374 487 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 CALUO43852 315 aaPredicted RBP9.37□□□□□ -0.91
VPS4B-201ENST00000238497 EFCAB14O75071 495 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 GJB5O95377 273 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 RPL13P26373 211 aaKnown RBP9.37□□□□□ -0.91
VPS4B-201ENST00000238497 TMOD1P28289 359 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 CIITAP33076 1130 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 SLC26A2P50443 739 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 KCNMA1Q12791 1236 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 PADI6Q6TGC4 694 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 MTHFD1LQ6UB35 978 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 FAM186BQ8IYM0 893 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 SYT2Q8N9I0 419 aaPredicted RBP9.37□□□□□ -0.91
VPS4B-201ENST00000238497 PHOSPHO2Q8TCD6 241 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 MS4A14Q96JA4 679 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 OSMRQ99650 979 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 ZNF446Q9NWS9 450 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 GCNT4Q9P109 453 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 LRFN2Q9ULH4 789 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 FRMD4BQ9Y2L6 1034 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 TRPV2Q9Y5S1 764 aa9.37□□□□□ -0.91
VPS4B-201ENST00000238497 CHD9Q3L8U1 2897 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 ZNF263O14978 683 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 HIP1RO75146 1068 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 RPS6KA5O75582 802 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 CXCL10P02778 98 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 TUBB4AP04350 444 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 JAK3P52333 1124 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 PAN2Q504Q3 1202 aaKnown RBP9.36□□□□□ -0.91
VPS4B-201ENST00000238497 PLEKHG4Q58EX7 1191 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 MARCH8Q5T0T0 291 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 SPOUT1Q5T280 376 aaKnown RBP9.36□□□□□ -0.91
VPS4B-201ENST00000238497 PHLDB2Q86SQ0 1253 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 RAD9AQ99638 391 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 FHOD1Q9Y613 1164 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 DENND3A2RUS2 1198 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 ZSCAN20P17040 1043 aaPredicted RBP9.36□□□□□ -0.91
VPS4B-201ENST00000238497 LPIN1Q14693 890 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 ZNF484Q5JVG2 852 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 TAF3Q5VWG9 929 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 EFCAB12Q6NXP0 572 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 TRAF7Q6Q0C0 670 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 BBXQ8WY36 941 aaPredicted RBP9.36□□□□□ -0.91
VPS4B-201ENST00000238497 FAM167AQ96KS9 214 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 NACC1Q96RE7 527 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 RIT2Q99578 217 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 DNAJC7Q99615 494 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 GTPBP4Q9BZE4 634 aaKnown RBP9.36□□□□□ -0.91
VPS4B-201ENST00000238497 AGO3Q9H9G7 860 aaKnown RBP9.36□□□□□ -0.91
VPS4B-201ENST00000238497 TMEM265A0A087WTH1 108 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 CSDE1O75534 798 aaKnown RBP9.36□□□□□ -0.91
VPS4B-201ENST00000238497 ARHGEF15O94989 841 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 EYA4O95677 639 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 AFPP02771 609 aaKnown RBP9.36□□□□□ -0.91
VPS4B-201ENST00000238497 DLATP10515 647 aaKnown RBP9.36□□□□□ -0.91
VPS4B-201ENST00000238497 SFNP31947 248 aa9.36□□□□□ -0.91
VPS4B-201ENST00000238497 GCLMP48507 274 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms