RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 LLGL1Q15334 1064 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 TMC2Q8TDI7 906 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 C1orf54Q8WWF1 131 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 PSPC1Q8WXF1 523 aaKnown RBP20.03■□□□□ 0.8
CPSF3-201ENST00000238112 DDX1Q92499 740 aaKnown RBP20.03■□□□□ 0.8
CPSF3-201ENST00000238112 DHX38Q92620 1227 aaKnown RBP20.03■□□□□ 0.8
CPSF3-201ENST00000238112 TAAR1Q96RJ0 339 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 ROPN1BQ9BZX4 212 aaPredicted RBP20.03■□□□□ 0.8
CPSF3-201ENST00000238112 ROPN1Q9HAT0 212 aaPredicted RBP20.03■□□□□ 0.8
CPSF3-201ENST00000238112 WHRNQ9P202 907 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 ASIC3Q9UHC3 531 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 FSCN2O14926 492 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 GHRP10912 638 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 SFNP31947 248 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 GHRHRQ02643 423 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 PGM5Q15124 567 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 CLEC16AQ2KHT3 1053 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 POMGNT1Q8WZA1 660 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 SLCO2A1Q92959 643 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 ZBTB12Q9Y330 459 aaPredicted RBP20.03■□□□□ 0.8
CPSF3-201ENST00000238112 VIMP08670 466 aaKnown RBP20.02■□□□□ 0.8
CPSF3-201ENST00000238112 GTF2H1P32780 548 aa20.02■□□□□ 0.8
CPSF3-201ENST00000238112 KRT76Q01546 638 aa20.02■□□□□ 0.8
CPSF3-201ENST00000238112 SNX1Q13596 522 aa20.02■□□□□ 0.8
CPSF3-201ENST00000238112 FKBP1CQ5VVH2 108 aa20.02■□□□□ 0.8
CPSF3-201ENST00000238112 MFSD5Q6N075 450 aa20.02■□□□□ 0.8
CPSF3-201ENST00000238112 TAX1BP1Q86VP1 789 aa20.02■□□□□ 0.8
CPSF3-201ENST00000238112 LRRC34Q8IZ02 419 aa20.02■□□□□ 0.8
CPSF3-201ENST00000238112 NSRP1Q9H0G5 558 aaKnown RBP20.02■□□□□ 0.8
CPSF3-201ENST00000238112 CCT8L1PA6NM43 557 aa20.02■□□□□ 0.79
CPSF3-201ENST00000238112 WDR46O15213 610 aaKnown RBP20.02■□□□□ 0.79
CPSF3-201ENST00000238112 ATP9AO75110 1047 aa20.02■□□□□ 0.79
CPSF3-201ENST00000238112 RPS6P62753 249 aaKnown RBP20.02■□□□□ 0.79
CPSF3-201ENST00000238112 SV2AQ7L0J3 742 aa20.02■□□□□ 0.79
CPSF3-201ENST00000238112 MAIP1Q8WWC4 291 aa20.02■□□□□ 0.79
CPSF3-201ENST00000238112 MFSD14AQ96MC6 490 aa20.02■□□□□ 0.79
CPSF3-201ENST00000238112 GMLQ99445 158 aa20.02■□□□□ 0.79
CPSF3-201ENST00000238112 CDC42EP4Q9H3Q1 356 aaKnown RBP20.02■□□□□ 0.79
CPSF3-201ENST00000238112 CCDC134Q9H6E4 229 aa20.02■□□□□ 0.79
CPSF3-201ENST00000238112 MAP3K20Q9NYL2 800 aaKnown RBP20.02■□□□□ 0.79
CPSF3-201ENST00000238112 CCNE2O96020 404 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 CYP24A1Q07973 514 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 ITIH4Q14624 930 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 CCDC38Q502W7 563 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 TNFAIP8L3Q5GJ75 292 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 ENOSF1Q7L5Y1 443 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 FAM83AQ86UY5 434 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 ELMO3Q96BJ8 720 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 HAUS2Q9NVX0 235 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 CTDP1Q9Y5B0 961 aaPredicted RBP20.01■□□□□ 0.79
CPSF3-201ENST00000238112 TESPA1A2RU30 521 aaPredicted RBP20.01■□□□□ 0.79
CPSF3-201ENST00000238112 GRIN3BO60391 1043 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 ACSL3O95573 720 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 MAN1A1P33908 653 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 IFNAR2P48551 515 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 MKRN4PQ13434 485 aaPredicted RBP20.01■□□□□ 0.79
CPSF3-201ENST00000238112 PIGWQ7Z7B1 504 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 RMDN3Q96TC7 470 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 HOMER3Q9NSC5 361 aa20.01■□□□□ 0.79
CPSF3-201ENST00000238112 CHUKO15111 745 aa20■□□□□ 0.79
CPSF3-201ENST00000238112 ITIH2P19823 946 aa20■□□□□ 0.79
CPSF3-201ENST00000238112 SCP2P22307 547 aa20■□□□□ 0.79
CPSF3-201ENST00000238112 CNGA2Q16280 664 aa20■□□□□ 0.79
CPSF3-201ENST00000238112 LONRF1Q17RB8 773 aa20■□□□□ 0.79
CPSF3-201ENST00000238112 CHADLQ6NUI6 762 aa20■□□□□ 0.79
CPSF3-201ENST00000238112 CYB5D1Q6P9G0 228 aa20■□□□□ 0.79
CPSF3-201ENST00000238112 SYDE1Q6ZW31 735 aaPredicted RBP20■□□□□ 0.79
CPSF3-201ENST00000238112 FUKQ8N0W3 1084 aa20■□□□□ 0.79
CPSF3-201ENST00000238112 LPAR1Q92633 364 aa20■□□□□ 0.79
CPSF3-201ENST00000238112 SNF8Q96H20 258 aa20■□□□□ 0.79
CPSF3-201ENST00000238112 FAM81BQ96LP2 452 aa20■□□□□ 0.79
CPSF3-201ENST00000238112 FBXL18Q96ME1 805 aa20■□□□□ 0.79
CPSF3-201ENST00000238112 JPH2Q9BR39 696 aaPredicted RBP20■□□□□ 0.79
CPSF3-201ENST00000238112 DDX23Q9BUQ8 820 aaKnown RBP20■□□□□ 0.79
CPSF3-201ENST00000238112 SLC38A10Q9HBR0 1119 aa20■□□□□ 0.79
CPSF3-201ENST00000238112 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20■□□□□ 0.79
CPSF3-201ENST00000238112 GAS8O95995 478 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 ATP5DP30049 168 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 GCNT1Q02742 428 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 ANO5Q75V66 913 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 CCDC91Q7Z6B0 441 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 GPD1LQ8N335 351 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 LARGE2Q8N3Y3 721 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 GRK7Q8WTQ7 553 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 DYDC1Q8WWB3 177 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 SPIRE2Q8WWL2 714 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 SGSM3Q96HU1 749 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 ELAC2Q9BQ52 826 aaKnown RBP19.99■□□□□ 0.79
CPSF3-201ENST00000238112 PI4K2AQ9BTU6 479 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 C1orf112Q9NSG2 853 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 HNRNPDLO14979 420 aaKnown RBP19.99■□□□□ 0.79
CPSF3-201ENST00000238112 HSPA1LP34931 641 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 RDXP35241 583 aaKnown RBP19.99■□□□□ 0.79
CPSF3-201ENST00000238112 SLC1A1P43005 524 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 ARHGEF16Q5VV41 709 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 SLC39A4Q6P5W5 647 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 OTUD6AQ7L8S5 288 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 EXOC3L1Q86VI1 746 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 PARP9Q8IXQ6 854 aa19.99■□□□□ 0.79
CPSF3-201ENST00000238112 SAMD3Q8N6K7 520 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms