RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PPEF1O14829 653 aaPredicted RBP13.26□□□□□ -0.29
NUP88-201ENST00000225696 FSCN2O14926 492 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 GRIN3BO60391 1043 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 NEBLO76041 1014 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 GBP1P32455 592 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 MSH2P43246 934 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 ZNF772Q68DY9 489 aaPredicted RBP13.26□□□□□ -0.29
NUP88-201ENST00000225696 TATDN1Q6P1N9 297 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 FAM47EQ6ZV65 393 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 MAB21L3Q8N8X9 362 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 SLC17A8Q8NDX2 589 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 GMCL1Q96IK5 515 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 RUNDC3BQ96NL0 473 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 HEMGNQ9BXL5 484 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 TAOK3Q9H2K8 898 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 DBNDD1Q9H9R9 158 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 TOPORSQ9NS56 1045 aaPredicted RBP13.26□□□□□ -0.29
NUP88-201ENST00000225696 NINJ2Q9NZG7 142 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 HSPBP1Q9NZL4 362 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 PI4KBQ9UBF8 816 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 ARL2BPQ9Y2Y0 163 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 STK24Q9Y6E0 443 aa13.26□□□□□ -0.29
NUP88-201ENST00000225696 ZNFX1Q9P2E3 1918 aaKnown RBP13.26□□□□□ -0.29
NUP88-201ENST00000225696 A0A1B0GUA9 196 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 PIK3CDO00329 1044 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 UPP2O95045 317 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 CYP11B1P15538 503 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 HMGB2P26583 209 aaKnown RBP13.25□□□□□ -0.29
NUP88-201ENST00000225696 ABCB5Q2M3G0 1257 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 PADI6Q6TGC4 694 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 INTS8Q75QN2 995 aaKnown RBP13.25□□□□□ -0.29
NUP88-201ENST00000225696 CBWD2Q8IUF1 395 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 GMCL1P1Q8NEA9 526 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 KCNV2Q8TDN2 545 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 C7orf43Q8WVR3 580 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 CCDC127Q96BQ5 260 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 RSRC1Q96IZ7 334 aaKnown RBP13.25□□□□□ -0.29
NUP88-201ENST00000225696 C9orf72Q96LT7 481 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 ZNF577Q9BSK1 485 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 RXFP1Q9HBX9 757 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 GPRC5CQ9NQ84 441 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 WHRNQ9P202 907 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.25□□□□□ -0.29
NUP88-201ENST00000225696 NKX1-2Q9UD57 310 aaPredicted RBP13.25□□□□□ -0.29
NUP88-201ENST00000225696 NAALADL1Q9UQQ1 740 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 ARHGEF35A5YM69 484 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 GZMAP12544 262 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 TAC1P20366 129 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 RFX1P22670 979 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 RBM5P52756 815 aaKnown RBP eCLIP13.25□□□□□ -0.29
NUP88-201ENST00000225696 WDR4P57081 412 aaKnown RBP13.25□□□□□ -0.29
NUP88-201ENST00000225696 CEP55Q53EZ4 464 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 ANKS1BQ7Z6G8 1248 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 CROCCP2Q86T23 111 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 DDX1Q92499 740 aaKnown RBP13.25□□□□□ -0.29
NUP88-201ENST00000225696 ADAM33Q9BZ11 813 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 SLC5A4Q9NY91 659 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 SUGT1Q9Y2Z0 365 aa13.25□□□□□ -0.29
NUP88-201ENST00000225696 UBE4BO95155 1302 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 THAP12O43422 761 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 RRM1P23921 792 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 MXI1P50539 228 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 B3GNT9Q6UX72 402 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 TMEM179Q6ZVK1 233 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 SP8Q8IXZ3 490 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 ACER1Q8TDN7 264 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 SAAL1Q96ER3 474 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 TMEM237Q96Q45 408 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 QTRT2Q9H974 415 aaKnown RBP13.24□□□□□ -0.29
NUP88-201ENST00000225696 NOP53Q9NZM5 478 aaKnown RBP13.24□□□□□ -0.29
NUP88-201ENST00000225696 SPAG7O75391 227 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 ITIH2P19823 946 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 ADSSP30520 456 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 STX2P32856 288 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 ADCY8P40145 1251 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 HP1BP3Q5SSJ5 553 aaPredicted RBP13.24□□□□□ -0.29
NUP88-201ENST00000225696 STXBP4Q6ZWJ1 553 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 HELQQ8TDG4 1101 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 SHC3Q92529 594 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 SLCO2A1Q92959 643 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 SNF8Q96H20 258 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 KIF9Q9HAQ2 790 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 SLCO1B3Q9NPD5 702 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 ANAPC7Q9UJX3 599 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 GTF3C4Q9UKN8 822 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 ZBTB21Q9ULJ3 1066 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 GRID1Q9ULK0 1009 aa13.24□□□□□ -0.29
NUP88-201ENST00000225696 IPO5O00410 1097 aaKnown RBP13.23□□□□□ -0.29
NUP88-201ENST00000225696 ABL2P42684 1182 aa13.23□□□□□ -0.29
NUP88-201ENST00000225696 SLC8A3P57103 927 aa13.23□□□□□ -0.29
NUP88-201ENST00000225696 SPP2Q13103 211 aa13.23□□□□□ -0.29
NUP88-201ENST00000225696 FMNL3Q8IVF7 1028 aa13.23□□□□□ -0.29
NUP88-201ENST00000225696 XXYLT1Q8NBI6 393 aa13.23□□□□□ -0.29
NUP88-201ENST00000225696 TAS1R2Q8TE23 839 aa13.23□□□□□ -0.29
NUP88-201ENST00000225696 ZDHHC15Q96MV8 337 aa13.23□□□□□ -0.29
NUP88-201ENST00000225696 PAIP2Q9BPZ3 127 aaKnown RBP13.23□□□□□ -0.29
NUP88-201ENST00000225696 PI4K2AQ9BTU6 479 aa13.23□□□□□ -0.29
NUP88-201ENST00000225696 KIFC3Q9BVG8 833 aa13.23□□□□□ -0.29
NUP88-201ENST00000225696 DCLK3Q9C098 648 aa13.23□□□□□ -0.29
NUP88-201ENST00000225696 MYLK2Q9H1R3 596 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms