RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 SGK1O00141 431 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 TRIM24O15164 1050 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 THRAP10827 490 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 MAPK7Q13164 816 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 TOP3AQ13472 1001 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 ZNF268Q14587 947 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 ZNF846Q147U1 533 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 MTFR1Q15390 333 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 DGUOKQ16854 277 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 SHQ1Q6PI26 577 aaKnown RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 PACS1Q6VY07 963 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 MYCT1Q8N699 235 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 NACA2Q9H009 215 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 TRIM45Q9H8W5 580 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 SAYSD1Q9NPB0 183 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 TBC1D7Q9P0N9 293 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 SOX13Q9UN79 622 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 CAMSAP1Q5T5Y3 1602 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 FAM83GA6ND36 823 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 NUDT17P0C025 328 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 PSMA4P25789 261 aaKnown RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 PEX5P50542 639 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 ANGPT1Q15389 498 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 LRRC8EQ6NSJ5 796 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 CASC4Q6P4E1 433 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 SH2D3CQ8N5H7 860 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 KRT35Q92764 455 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 ACAP3Q96P50 834 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 DBNDD2Q9BQY9 259 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 KRT82Q9NSB4 513 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 RBM12Q9NTZ6 932 aaKnown RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 GPC6Q9Y625 555 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 B2RBV5 119 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 TRIP13Q15645 432 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 XKRXQ6PP77 449 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 LRRC6Q86X45 466 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ADSSL1Q8N142 457 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 SNRKQ9NRH2 765 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 PAMP19021 973 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 TKTP29401 623 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 DRG2P55039 364 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 SCRN3Q0VDG4 424 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 CSTF3Q12996 717 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ITGB3BPQ13352 177 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 MLECQ14165 292 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 TRIM65Q6PJ69 517 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 SAMD1Q6SPF0 538 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 FKBP9P1Q75LS8 142 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 NEDD1Q8NHV4 660 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 MANSC1Q9H8J5 431 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 SNX24Q9Y343 169 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 MYO3BQ8WXR4 1341 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 MEIS1O00470 390 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 TLR3O15455 904 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 PJA2O43164 708 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 KRT14P02533 472 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 CAPN1P07384 714 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ATF7P17544 494 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 SEC24CP53992 1094 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ERMARDQ5T6L9 678 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 C11orf63Q6NUN7 778 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 JAMLQ86YT9 394 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ANKRD13CQ8N6S4 541 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ANKHQ9HCJ1 492 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 WBP11Q9Y2W2 641 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 AFF2P51816 1311 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 TRPC5OSA6NMA1 111 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 UBOX5O94941 541 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ATN1P54259 1190 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 TOB2Q14106 344 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 MIGA2Q7L4E1 593 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 OTUD6AQ7L8S5 288 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 SUN5Q8TC36 379 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 RHOBTB2Q9BYZ6 727 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 DDX47Q9H0S4 455 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 EMC3Q9P0I2 261 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 HPS5Q9UPZ3 1129 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 DMRT2Q9Y5R5 561 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ZNF608Q9ULD9 1512 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 UMODL1Q5DID0 1318 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 DAPK3O43293 454 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 SRP72O76094 671 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ABCB1P08183 1280 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ATICP31939 592 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 RPL22P35268 128 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 COPB2P35606 906 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 CDK7P50613 346 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 OASLQ15646 514 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 SETD9Q8NE22 299 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 BTBD10Q9BSF8 475 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 EFCAB1Q9HAE3 211 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 LZTS1Q9Y250 596 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 KLHL20Q9Y2M5 609 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ATP8B3O60423 1300 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 SASH3O75995 380 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 PPARAQ07869 468 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 THOC5Q13769 683 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 C6orf10Q5SRN2 563 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 NT5DC1Q5TFE4 455 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 TXNDC2Q86VQ3 553 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms