RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 PGBD4Q96DM1 585 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 ZNF317Q96PQ6 595 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 BTBD10Q9BSF8 475 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 KIAA1683Q9H0B3 1180 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 SLITRK6Q9H5Y7 841 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 CRNNQ9UBG3 495 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 CARMIL3Q8ND23 1372 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 H7C0C1 242 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 CLASP2O75122 1294 aaKnown RBP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 DEAF1O75398 565 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 UQCRBP14927 111 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 GNA11P29992 359 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 GNG2P59768 71 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 FKBP4Q02790 459 aaKnown RBP eCLIP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 GFPT1Q06210 699 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 ST3GAL1Q11201 340 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 TRMT5Q32P41 509 aaKnown RBP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 KHDC1Q4VXA5 237 aaKnown RBP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 TLK2Q86UE8 772 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 AFAP1L2Q8N4X5 818 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 MB21D1Q8N884 522 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 MTBPQ96DY7 904 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 LRGUKQ96M69 825 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 PPP1R10Q96QC0 940 aaKnown RBP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 NOC4LQ9BVI4 516 aaKnown RBP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 BOLA2Q9H3K6 86 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 SAR1AQ9NR31 198 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 HOXC10Q9NYD6 342 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 TMOD3Q9NYL9 352 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 IP6K2Q9UHH9 426 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 TIMM22Q9Y584 194 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 PLEKHG1Q9ULL1 1385 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 FAM196BA6NMK8 535 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 CCRL2O00421 344 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 GABBR2O75899 941 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 GJB6O95452 261 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 UBL4AP11441 157 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 TCEA1P23193 301 aaKnown RBP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 ADCY8P40145 1251 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 MMP13P45452 471 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 LRRC63Q05C16 580 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 TTLL12Q14166 644 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 CEP55Q53EZ4 464 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 SIGIRRQ6IA17 410 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 FAM117BQ6P1L5 589 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 ZNF662Q6ZS27 426 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 BTN2A1Q7KYR7 527 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 LRRC6Q86X45 466 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 DDX42Q86XP3 938 aaKnown RBP eCLIP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 IFNL1Q8IU54 200 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 HACE1Q8IYU2 909 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 ELMOD2Q8IZ81 293 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 IFT43Q96FT9 208 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 MTMR9Q96QG7 549 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 STK17AQ9UEE5 414 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 CAPN11Q9UMQ6 739 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 TFR2Q9UP52 801 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 SNX9Q9Y5X1 595 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 SYCP2Q9BX26 1530 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 KLF18A0A0U1RQI7 1052 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ZC3H11AO75152 810 aaKnown RBP eCLIP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ZBTB11O95625 1053 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 HSD17B4P51659 736 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 XIAPP98170 497 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 NIPAL4Q0D2K0 466 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ITGADQ13349 1161 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 PPP2R5CQ13362 524 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 NONOQ15233 471 aaKnown RBP eCLIP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 STK11Q15831 433 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 GALNTL6Q49A17 601 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ZC2HC1CQ53FD0 456 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 TCP11X2Q5H9J9 407 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 FAM209AQ5JX71 171 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 SPDYCQ5MJ68 293 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 RABGAP1LQ5R372 815 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 DGLUCYQ7Z3D6 616 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 CCDC28AQ8IWP9 274 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 CRACR2BQ8N4Y2 399 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 SLC26A7Q8TE54 656 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 MAGEB18Q96M61 343 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 PRM3Q9NNZ6 103 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 PCDH12Q9NPG4 1184 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 FARSBQ9NSD9 589 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 MRPL39Q9NYK5 338 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 PRKAG3Q9UGI9 489 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 MAFFQ9ULX9 164 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 IQSEC2Q5JU85 1478 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 PBRM1Q86U86 1689 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 INO80B-WBP1J3KQ70 363 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ARHGEF9O43307 516 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ANPEPP15144 967 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 EEF1GP26641 437 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 CIITAP33076 1130 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ADD1P35611 737 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 BCL2A1Q16548 175 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 DNAL1Q4LDG9 190 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 RARS2Q5T160 578 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 IL23RQ5VWK5 629 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ZCCHC8Q6NZY4 707 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 BTNL9Q6UXG8 535 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms