RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 C12orf50Q8NA57 414 aaPredicted RBP16.28■□□□□ 0.2
CLN3-249ENST00000636685 SLC7A14Q8TBB6 771 aa16.28■□□□□ 0.2
CLN3-249ENST00000636685 APOL6Q9BWW8 343 aa16.28■□□□□ 0.2
CLN3-249ENST00000636685 CACNG4Q9UBN1 327 aa16.28■□□□□ 0.2
CLN3-249ENST00000636685 KCNH3Q9ULD8 1083 aa16.28■□□□□ 0.2
CLN3-249ENST00000636685 MRPS23Q9Y3D9 190 aaKnown RBP16.28■□□□□ 0.2
CLN3-249ENST00000636685 PDCD11Q14690 1871 aaKnown RBP16.27■□□□□ 0.2
CLN3-249ENST00000636685 hCG_1984214I3L0E3 225 aa16.27■□□□□ 0.2
CLN3-249ENST00000636685 AXIN1O15169 862 aa16.27■□□□□ 0.2
CLN3-249ENST00000636685 MSH4O15457 936 aa16.27■□□□□ 0.2
CLN3-249ENST00000636685 SRGAP2CP0DJJ0 459 aa16.27■□□□□ 0.2
CLN3-249ENST00000636685 JAK3P52333 1124 aa16.27■□□□□ 0.2
CLN3-249ENST00000636685 LRSAM1Q6UWE0 723 aa16.27■□□□□ 0.2
CLN3-249ENST00000636685 CEP68Q76N32 757 aa16.27■□□□□ 0.2
CLN3-249ENST00000636685 LONP2Q86WA8 852 aa16.27■□□□□ 0.2
CLN3-249ENST00000636685 ZNF713Q8N859 430 aaPredicted RBP16.27■□□□□ 0.2
CLN3-249ENST00000636685 CNNM3Q8NE01 707 aa16.27■□□□□ 0.2
CLN3-249ENST00000636685 EXOC6Q8TAG9 804 aa16.27■□□□□ 0.2
CLN3-249ENST00000636685 FAM3CQ92520 227 aa16.27■□□□□ 0.2
CLN3-249ENST00000636685 ARRDC1-AS1Q9H2J1 176 aa16.27■□□□□ 0.2
CLN3-249ENST00000636685 BRD9Q9H8M2 597 aa16.27■□□□□ 0.2
CLN3-249ENST00000636685 COL4A3BPQ9Y5P4 624 aa16.27■□□□□ 0.2
CLN3-249ENST00000636685 RBM8AQ9Y5S9 174 aaKnown RBP16.27■□□□□ 0.2
CLN3-249ENST00000636685 AKAP13Q12802 2813 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 SRRM3A6NNA2 597 aaPredicted RBP16.26■□□□□ 0.19
CLN3-249ENST00000636685 DDX11L8A8MPP1 907 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 GAS7O60861 476 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 TADA2AO75478 443 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 SPINK2P20155 84 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 HOXC13P31276 330 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 SFNP31947 248 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 CIITAP33076 1130 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 CNR2P34972 360 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 SLC5A9Q2M3M2 681 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 AXDND1Q5T1B0 1012 aaPredicted RBP16.26■□□□□ 0.19
CLN3-249ENST00000636685 PLA2G4FQ68DD2 849 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 PSAPL1Q6NUJ1 521 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 SRGAP1Q7Z6B7 1085 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 RUFY2Q8WXA3 655 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 ELSPBP1Q96BH3 223 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 LSM14BQ9BX40 385 aaKnown RBP16.26■□□□□ 0.19
CLN3-249ENST00000636685 TEKT3Q9BXF9 490 aa16.26■□□□□ 0.19
CLN3-249ENST00000636685 DSPP15924 2871 aaKnown RBP16.26■□□□□ 0.19
CLN3-249ENST00000636685 GCN1Q92616 2671 aaKnown RBP16.25■□□□□ 0.19
CLN3-249ENST00000636685 K7ESF4 209 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 NRG2O14511 850 aaPredicted RBP16.25■□□□□ 0.19
CLN3-249ENST00000636685 POU2F2P09086 479 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 ZNF806P0C7X5 589 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 CHRNB1P11230 501 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 CEBPBP17676 345 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 FCARP24071 287 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 CHMLP26374 656 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 RING1Q06587 406 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 PSMD5Q16401 504 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 LRCH2Q5VUJ6 765 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 MIER3Q7Z3K6 550 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 CEP57Q86XR8 500 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 GSTCDQ8NEC7 633 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 LNX1Q8TBB1 728 aaPredicted RBP16.25■□□□□ 0.19
CLN3-249ENST00000636685 HASPINQ8TF76 798 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 PIK3R5Q8WYR1 880 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 SLC5A5Q92911 643 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 RIT2Q99578 217 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 PAAF1Q9BRP4 392 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 TTPALQ9BTX7 342 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 TMEM121BQ9BXQ6 578 aaPredicted RBP16.25■□□□□ 0.19
CLN3-249ENST00000636685 RBM28Q9NW13 759 aaKnown RBP16.25■□□□□ 0.19
CLN3-249ENST00000636685 GDE1Q9NZC3 331 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 LHX6Q9UPM6 363 aa16.25■□□□□ 0.19
CLN3-249ENST00000636685 SF3B1O75533 1304 aaKnown RBP eCLIP16.24■□□□□ 0.19
CLN3-249ENST00000636685 EDIL3O43854 480 aa16.24■□□□□ 0.19
CLN3-249ENST00000636685 GSPT1P15170 499 aaKnown RBP16.24■□□□□ 0.19
CLN3-249ENST00000636685 FOXC1Q12948 553 aa16.24■□□□□ 0.19
CLN3-249ENST00000636685 FAM171A1Q5VUB5 890 aa16.24■□□□□ 0.19
CLN3-249ENST00000636685 ANO5Q75V66 913 aa16.24■□□□□ 0.19
CLN3-249ENST00000636685 SGMS1Q86VZ5 419 aa16.24■□□□□ 0.19
CLN3-249ENST00000636685 SPEM1Q8N4L4 309 aa16.24■□□□□ 0.19
CLN3-249ENST00000636685 PRPF31Q8WWY3 499 aaKnown RBP16.24■□□□□ 0.19
CLN3-249ENST00000636685 TMEM143Q96AN5 459 aa16.24■□□□□ 0.19
CLN3-249ENST00000636685 CPB2Q96IY4 423 aa16.24■□□□□ 0.19
CLN3-249ENST00000636685 SMOC1Q9H4F8 434 aa16.24■□□□□ 0.19
CLN3-249ENST00000636685 C2orf42Q9NWW7 574 aa16.24■□□□□ 0.19
CLN3-249ENST00000636685 PIAS3Q9Y6X2 628 aa16.24■□□□□ 0.19
CLN3-249ENST00000636685 LAMA1P25391 3075 aa16.24■□□□□ 0.19
CLN3-249ENST00000636685 NBEAQ8NFP9 2946 aa16.23■□□□□ 0.19
CLN3-249ENST00000636685 GIPC1O14908 333 aa16.23■□□□□ 0.19
CLN3-249ENST00000636685 TOP3BO95985 862 aaKnown RBP16.23■□□□□ 0.19
CLN3-249ENST00000636685 RHOP08100 348 aa16.23■□□□□ 0.19
CLN3-249ENST00000636685 AKAP5P24588 427 aa16.23■□□□□ 0.19
CLN3-249ENST00000636685 NPEPPSP55786 919 aa16.23■□□□□ 0.19
CLN3-249ENST00000636685 LAMTOR4Q0VGL1 99 aa16.23■□□□□ 0.19
CLN3-249ENST00000636685 HSP90AA2PQ14568 343 aaPredicted RBP16.23■□□□□ 0.19
CLN3-249ENST00000636685 RTN1Q16799 776 aa16.23■□□□□ 0.19
CLN3-249ENST00000636685 APOA5Q6Q788 366 aa16.23■□□□□ 0.19
CLN3-249ENST00000636685 SYNE3Q6ZMZ3 975 aa16.23■□□□□ 0.19
CLN3-249ENST00000636685 REXO1Q8N1G1 1221 aaKnown RBP16.23■□□□□ 0.19
CLN3-249ENST00000636685 ZNF579Q8NAF0 562 aaKnown RBP16.23■□□□□ 0.19
CLN3-249ENST00000636685 JPH2Q9BR39 696 aaPredicted RBP16.23■□□□□ 0.19
CLN3-249ENST00000636685 TRMT61BQ9BVS5 477 aaKnown RBP16.23■□□□□ 0.19
CLN3-249ENST00000636685 NXF3Q9H4D5 531 aaKnown RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms