RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 TTC38Q5R3I4 469 aa20.35■□□□□ 0.85
CLN3-241ENST00000635861 POTEGQ6S5H5 508 aa20.35■□□□□ 0.85
CLN3-241ENST00000635861 MAEAQ7L5Y9 396 aa20.35■□□□□ 0.85
CLN3-241ENST00000635861 NOSTRINQ8IVI9 506 aa20.35■□□□□ 0.85
CLN3-241ENST00000635861 FAM184AQ8NB25 1140 aa20.35■□□□□ 0.85
CLN3-241ENST00000635861 RAB34Q9BZG1 259 aa20.35■□□□□ 0.85
CLN3-241ENST00000635861 GPR62Q9BZJ7 368 aa20.35■□□□□ 0.85
CLN3-241ENST00000635861 PDZD7Q9H5P4 517 aa20.35■□□□□ 0.85
CLN3-241ENST00000635861 GALR2O43603 387 aaPredicted RBP20.34■□□□□ 0.85
CLN3-241ENST00000635861 PDGFBP01127 241 aaPredicted RBP20.34■□□□□ 0.85
CLN3-241ENST00000635861 PRKCBP05771 671 aa20.34■□□□□ 0.85
CLN3-241ENST00000635861 CLCN5P51795 746 aa20.34■□□□□ 0.85
CLN3-241ENST00000635861 PDIA5Q14554 519 aa20.34■□□□□ 0.85
CLN3-241ENST00000635861 ZNF174Q15697 407 aa20.34■□□□□ 0.85
CLN3-241ENST00000635861 DCAF4L1Q3SXM0 396 aa20.34■□□□□ 0.85
CLN3-241ENST00000635861 CDR2LQ86X02 465 aaPredicted RBP20.34■□□□□ 0.85
CLN3-241ENST00000635861 DEPTORQ8TB45 409 aa20.34■□□□□ 0.85
CLN3-241ENST00000635861 KIFAP3Q92845 792 aa20.34■□□□□ 0.85
CLN3-241ENST00000635861 NXPE3Q969Y0 559 aa20.34■□□□□ 0.85
CLN3-241ENST00000635861 IFT74Q96LB3 600 aa20.34■□□□□ 0.85
CLN3-241ENST00000635861 CCDC113Q9H0I3 377 aa20.34■□□□□ 0.85
CLN3-241ENST00000635861 DUSP12Q9UNI6 340 aa20.34■□□□□ 0.85
CLN3-241ENST00000635861 DOCK6Q96HP0 2047 aa20.33■□□□□ 0.85
CLN3-241ENST00000635861 A0A087WWV3 80 aa20.33■□□□□ 0.84
CLN3-241ENST00000635861 TADA2AO75478 443 aa20.33■□□□□ 0.84
CLN3-241ENST00000635861 SEC24BO95487 1268 aa20.33■□□□□ 0.84
CLN3-241ENST00000635861 THP07101 528 aa20.33■□□□□ 0.84
CLN3-241ENST00000635861 ELAVL2Q12926 359 aaKnown RBP20.33■□□□□ 0.84
CLN3-241ENST00000635861 TMEM132AQ24JP5 1023 aa20.33■□□□□ 0.84
CLN3-241ENST00000635861 ASTLQ6HA08 431 aaPredicted RBP20.33■□□□□ 0.84
CLN3-241ENST00000635861 PDXDC1Q6P996 788 aa20.33■□□□□ 0.84
CLN3-241ENST00000635861 APBB1IPQ7Z5R6 666 aaPredicted RBP20.33■□□□□ 0.84
CLN3-241ENST00000635861 MFSD1Q9H3U5 465 aa20.33■□□□□ 0.84
CLN3-241ENST00000635861 KLK14Q9P0G3 267 aa20.33■□□□□ 0.84
CLN3-241ENST00000635861 CLUHO75153 1309 aa20.33■□□□□ 0.84
CLN3-241ENST00000635861 F8W810 466 aa20.32■□□□□ 0.84
CLN3-241ENST00000635861 LAD1O00515 517 aa20.32■□□□□ 0.84
CLN3-241ENST00000635861 LILRA6Q6PI73 481 aa20.32■□□□□ 0.84
CLN3-241ENST00000635861 RIN2Q8WYP3 895 aaPredicted RBP20.32■□□□□ 0.84
CLN3-241ENST00000635861 BSNDQ8WZ55 320 aa20.32■□□□□ 0.84
CLN3-241ENST00000635861 SMG7Q92540 1137 aaKnown RBP20.32■□□□□ 0.84
CLN3-241ENST00000635861 KCNK12Q9HB15 430 aa20.32■□□□□ 0.84
CLN3-241ENST00000635861 EPS15L1Q9UBC2 864 aa20.32■□□□□ 0.84
CLN3-241ENST00000635861 PHLPP2Q6ZVD8 1323 aa20.32■□□□□ 0.84
CLN3-241ENST00000635861 PDCD11Q14690 1871 aaKnown RBP20.32■□□□□ 0.84
CLN3-241ENST00000635861 TGM5O43548 720 aa20.31■□□□□ 0.84
CLN3-241ENST00000635861 U2AF2P26368 475 aaKnown RBP eCLIP20.31■□□□□ 0.84
CLN3-241ENST00000635861 NT5C3AQ9H0P0 336 aa20.31■□□□□ 0.84
CLN3-241ENST00000635861 SNTG2Q9NY99 539 aa20.31■□□□□ 0.84
CLN3-241ENST00000635861 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.31■□□□□ 0.84
CLN3-241ENST00000635861 LRWD1Q9UFC0 647 aa20.31■□□□□ 0.84
CLN3-241ENST00000635861 ZFHX2Q9C0A1 2572 aaPredicted RBP20.3■□□□□ 0.84
CLN3-241ENST00000635861 PTGESO14684 152 aa20.3■□□□□ 0.84
CLN3-241ENST00000635861 RECQL4O94761 1208 aa20.3■□□□□ 0.84
CLN3-241ENST00000635861 CCT6AP40227 531 aaKnown RBP20.3■□□□□ 0.84
CLN3-241ENST00000635861 PALB2Q86YC2 1186 aa20.3■□□□□ 0.84
CLN3-241ENST00000635861 C4orf32Q8N8J7 132 aa20.3■□□□□ 0.84
CLN3-241ENST00000635861 IGSF22Q8N9C0 903 aa20.3■□□□□ 0.84
CLN3-241ENST00000635861 FEZF2Q8TBJ5 459 aa20.3■□□□□ 0.84
CLN3-241ENST00000635861 PIK3R5Q8WYR1 880 aa20.3■□□□□ 0.84
CLN3-241ENST00000635861 ZNF707Q96C28 371 aaPredicted RBP20.3■□□□□ 0.84
CLN3-241ENST00000635861 TTPALQ9BTX7 342 aa20.3■□□□□ 0.84
CLN3-241ENST00000635861 PRKD2Q9BZL6 878 aa20.3■□□□□ 0.84
CLN3-241ENST00000635861 SMOC2Q9H3U7 446 aa20.3■□□□□ 0.84
CLN3-241ENST00000635861 ZFP37Q9Y6Q3 630 aaPredicted RBP20.3■□□□□ 0.84
CLN3-241ENST00000635861 RFPL2O75678 378 aa20.29■□□□□ 0.84
CLN3-241ENST00000635861 GBP2P32456 591 aaPredicted RBP20.29■□□□□ 0.84
CLN3-241ENST00000635861 NAB2Q15742 525 aa20.29■□□□□ 0.84
CLN3-241ENST00000635861 TMEM105Q8N8V8 129 aa20.29■□□□□ 0.84
CLN3-241ENST00000635861 ATOH1Q92858 354 aaPredicted RBP20.29■□□□□ 0.84
CLN3-241ENST00000635861 PHOX2BQ99453 314 aa20.29■□□□□ 0.84
CLN3-241ENST00000635861 BHMT2Q9H2M3 363 aa20.29■□□□□ 0.84
CLN3-241ENST00000635861 PIDD1Q9HB75 910 aa20.29■□□□□ 0.84
CLN3-241ENST00000635861 KIF3AQ9Y496 699 aa20.29■□□□□ 0.84
CLN3-241ENST00000635861 MYH15Q9Y2K3 1946 aa20.29■□□□□ 0.84
CLN3-241ENST00000635861 VPS13AQ96RL7 3174 aa20.29■□□□□ 0.84
CLN3-241ENST00000635861 TTLL13PA6NNM8 815 aa20.28■□□□□ 0.84
CLN3-241ENST00000635861 TMEM189-UBE2V1I3L0A0 370 aa20.28■□□□□ 0.84
CLN3-241ENST00000635861 ST18O60284 1047 aa20.28■□□□□ 0.84
CLN3-241ENST00000635861 ZMYND10O75800 440 aa20.28■□□□□ 0.84
CLN3-241ENST00000635861 PRPHP41219 470 aa20.28■□□□□ 0.84
CLN3-241ENST00000635861 RTP2Q5QGT7 225 aa20.28■□□□□ 0.84
CLN3-241ENST00000635861 B3GALT6Q96L58 329 aa20.28■□□□□ 0.84
CLN3-241ENST00000635861 UROC1Q96N76 676 aa20.28■□□□□ 0.84
CLN3-241ENST00000635861 PAAF1Q9BRP4 392 aa20.28■□□□□ 0.84
CLN3-241ENST00000635861 WNT16Q9UBV4 365 aa20.28■□□□□ 0.84
CLN3-241ENST00000635861 FBXW11Q9UKB1 542 aa20.28■□□□□ 0.84
CLN3-241ENST00000635861 KIAA1024Q9UPX6 916 aa20.28■□□□□ 0.84
CLN3-241ENST00000635861 MYO15AQ9UKN7 3530 aa20.28■□□□□ 0.84
CLN3-241ENST00000635861 CASTOR2A6NHX0 329 aa20.27■□□□□ 0.84
CLN3-241ENST00000635861 PROB1E7EW31 1015 aa20.27■□□□□ 0.84
CLN3-241ENST00000635861 N4BP1O75113 896 aaKnown RBP20.27■□□□□ 0.84
CLN3-241ENST00000635861 KIF4AO95239 1232 aa20.27■□□□□ 0.84
CLN3-241ENST00000635861 HNRNPA1P09651 372 aaKnown RBP eCLIP20.27■□□□□ 0.84
CLN3-241ENST00000635861 HOXA9P31269 272 aa20.27■□□□□ 0.84
CLN3-241ENST00000635861 PSMD5Q16401 504 aa20.27■□□□□ 0.84
CLN3-241ENST00000635861 ATF7IP2Q5U623 682 aa20.27■□□□□ 0.84
CLN3-241ENST00000635861 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.27■□□□□ 0.84
CLN3-241ENST00000635861 RTL10Q7L3V2 364 aa20.27■□□□□ 0.84
CLN3-241ENST00000635861 KCTD17Q8N5Z5 321 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms