RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 CAPN11Q9UMQ6 739 aa10.36□□□□□ -0.75
PDLIM5-223ENST00000627587 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.36□□□□□ -0.75
PDLIM5-223ENST00000627587 MTCH2Q9Y6C9 303 aa10.36□□□□□ -0.75
PDLIM5-223ENST00000627587 TTLL13PA6NNM8 815 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 EFCAB14O75071 495 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 ADRB2P07550 413 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 INSRRP14616 1297 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 MYOGP15173 224 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 SCP2P22307 547 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 CLCN1P35523 988 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 PSMC2P35998 433 aaKnown RBP10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 PPP2R3AQ06190 1150 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 NOLC1Q14978 699 aaKnown RBP eCLIP10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 SKIV2LQ15477 1246 aaKnown RBP10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 C1orf220Q5T0J3 134 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 MARCH8Q5T0T0 291 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 WDR59Q6PJI9 974 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 HERC6Q8IVU3 1022 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 FAM186BQ8IYM0 893 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 PRPF31Q8WWY3 499 aaKnown RBP10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 PCMTD1Q96MG8 357 aaPredicted RBP10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 DNAJC7Q99615 494 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 NUP58Q9BVL2 599 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 CCDC113Q9H0I3 377 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 HSPBP1Q9NZL4 362 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 FRMD4BQ9Y2L6 1034 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 ARIH1Q9Y4X5 557 aaPredicted RBP10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 SCN10AQ9Y5Y9 1956 aa10.35□□□□□ -0.75
PDLIM5-223ENST00000627587 H3BRB1 525 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 STX10O60499 249 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 CA3P07451 260 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 TRIM21P19474 475 aaKnown RBP10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 KRT9P35527 623 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 KCNJ6P48051 423 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 DLG4P78352 724 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 MTF1Q14872 753 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 CDCA2Q69YH5 1023 aaPredicted RBP10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 MICALL1Q8N3F8 863 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 TCP11Q8WWU5 503 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 BAP1Q92560 729 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 KAT2BQ92831 832 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 IQCDQ96DY2 449 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 FBXL18Q96ME1 805 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 BAG1Q99933 345 aaPredicted RBP10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 TUT1Q9H6E5 874 aaKnown RBP10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 KCND1Q9NSA2 647 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 ZNF215Q9UL58 517 aaPredicted RBP10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 A0A1W2PQJ5 194 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 LRRIQ4A6NIV6 560 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 SOWAHDA6NJG2 315 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 EXOC3O60645 756 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 F2P00734 622 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 PIGRP01833 764 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 CLCN3P51790 818 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 TAP1Q03518 808 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 LAMTOR4Q0VGL1 99 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 HIC1Q14526 733 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 PTGISQ16647 500 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 DGKDQ16760 1214 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 CBWD6Q4V339 395 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 CBWD3Q5JTY5 395 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 CBWD5Q5RIA9 395 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 IER5Q5VY09 327 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 RAD9BQ6WBX8 426 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 CBWD2Q8IUF1 395 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 RDH13Q8NBN7 331 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 DEPTORQ8TB45 409 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 CCDC51Q96ER9 411 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 CRACR2AQ9BSW2 395 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 SUGCTQ9HAC7 445 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 SIX2Q9NPC8 291 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 FAM207AQ9NSI2 230 aaPredicted RBP10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 STYXL1Q9Y6J8 313 aa10.34□□□□□ -0.75
PDLIM5-223ENST00000627587 PRUNE2Q8WUY3 3088 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 MAPK13O15264 365 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 AFPP02771 609 aaKnown RBP10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 TRIM49P0CI25 452 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 TRIM49CP0CI26 452 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 BFSP1Q12934 665 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 STRN3Q13033 797 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 MXD4Q14582 209 aaPredicted RBP10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 MEA1Q16626 185 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 DCAF17Q5H9S7 520 aaPredicted RBP10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 ZNF484Q5JVG2 852 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 TCERG1LQ5VWI1 586 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 EFCAB12Q6NXP0 572 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 XXYLT1Q8NBI6 393 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 PPP1R13LQ8WUF5 828 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 PSPC1Q8WXF1 523 aaKnown RBP10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 HLA-CQ95604 372 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 SAAL1Q96ER3 474 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 BICD1Q96G01 975 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 CHP1Q99653 195 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 KATNAL1Q9BW62 490 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 GANQ9H2C0 597 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 TMEM134Q9H6X4 195 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 CHD9Q3L8U1 2897 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 COL1A2P08123 1366 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 PHLPP2Q6ZVD8 1323 aa10.33□□□□□ -0.76
PDLIM5-223ENST00000627587 SPTBN5Q9NRC6 3674 aaKnown RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms