RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 GASTP01350 101 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 ERBB2P04626 1255 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 CANXP27824 592 aaKnown RBP4.31□□□□□ -1.72
SCN1A-208ENST00000625916 MPLP40238 635 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 SCNN1BP51168 640 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 CHN2P52757 468 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 MANFP55145 182 aaKnown RBP4.31□□□□□ -1.72
SCN1A-208ENST00000625916 PHC1P78364 1004 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 EPHA10Q5JZY3 1008 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 CNNM4Q6P4Q7 775 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 FRMD7Q6ZUT3 714 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 CEP95Q96GE4 821 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 WNT8AQ9H1J5 351 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 SPTLC3Q9NUV7 552 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 TMEM260Q9NX78 707 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 TMPRSS11EQ9UL52 423 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 NOX1Q9Y5S8 564 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 COL11A2P13942 1736 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-208ENST00000625916 DRGXA6NNA5 263 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 KDM1AO60341 852 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 TMEM127O75204 238 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 CFIP05156 583 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 FDXRP22570 491 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 IL2P60568 153 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 TRIM25Q14258 630 aaKnown RBP4.3□□□□□ -1.72
SCN1A-208ENST00000625916 TERF2Q15554 542 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 TCEA2Q15560 299 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 MFSD14BQ5SR56 506 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 PRAMEF14Q5SWL7 426 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 ATXN7L2Q5T6C5 722 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-208ENST00000625916 C11orf74Q86VG3 221 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 LRRTM3Q86VH5 581 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 LYSMD2Q8IV50 215 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 SYNPOQ8N3V7 929 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 FAM98AQ8NCA5 519 aaKnown RBP4.3□□□□□ -1.72
SCN1A-208ENST00000625916 SMC1BQ8NDV3 1235 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 OR56A1Q8NGH5 318 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 ZNF480Q8WV37 535 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 NEU1Q99519 415 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 CD2APQ9Y5K6 639 aa4.3□□□□□ -1.72
SCN1A-208ENST00000625916 POLR2AP24928 1970 aaKnown RBP4.29□□□□□ -1.72
SCN1A-208ENST00000625916 MAST3O60307 1309 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 IGLV2-14P01704 120 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 POU3F2P20265 443 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-208ENST00000625916 CTSSP25774 331 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 FLT3LGP49771 235 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 CLRN1P58418 232 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 PCBP1Q15365 356 aaKnown RBP eCLIP4.29□□□□□ -1.72
SCN1A-208ENST00000625916 AGAP9Q5VTM2 703 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 PAPD7Q5XG87 772 aaKnown RBP4.29□□□□□ -1.72
SCN1A-208ENST00000625916 TSHZ3Q63HK5 1081 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 METRNLQ641Q3 311 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 ARHGEF25Q86VW2 580 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 MAPKAPK5Q8IW41 473 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 ZNF384Q8TF68 577 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 Q96MF0 132 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 ALOXE3Q9BYJ1 711 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 ZSWIM4Q9H7M6 989 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 FRMD4BQ9Y2L6 1034 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 CDY2AQ9Y6F7 541 aa4.29□□□□□ -1.72
SCN1A-208ENST00000625916 SALL3Q9BXA9 1300 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 MYADML2A6NDP7 307 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 LPLP06858 475 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 CRHR1P34998 444 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 PTPN7P35236 360 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 LSSP48449 732 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 LGALS4P56470 323 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 RAP2BP61225 183 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 ZNF169Q14929 603 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-208ENST00000625916 MED25Q71SY5 747 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 GPR149Q86SP6 731 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 SLC41A1Q8IVJ1 513 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 RHOT2Q8IXI1 618 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 TMEM132CQ8N3T6 1108 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 OR2W6PQ8NHA6 318 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 SLC35B2Q8TB61 432 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 RNF31Q96EP0 1072 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 PAWRQ96IZ0 340 aaKnown RBP4.28□□□□□ -1.72
SCN1A-208ENST00000625916 REXO4Q9GZR2 422 aaKnown RBP4.28□□□□□ -1.72
SCN1A-208ENST00000625916 KCTD10Q9H3F6 313 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 PRDM12Q9H4Q4 367 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 CASS4Q9NQ75 786 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 TBCCD1Q9NVR7 557 aa4.28□□□□□ -1.72
SCN1A-208ENST00000625916 NOC2LQ9Y3T9 749 aaKnown RBP4.28□□□□□ -1.72
SCN1A-208ENST00000625916 RPTORQ8N122 1335 aa4.27□□□□□ -1.73
SCN1A-208ENST00000625916 FAM83GA6ND36 823 aa4.27□□□□□ -1.73
SCN1A-208ENST00000625916 PJA2O43164 708 aa4.27□□□□□ -1.73
SCN1A-208ENST00000625916 ADCY6O43306 1168 aa4.27□□□□□ -1.73
SCN1A-208ENST00000625916 FKBP9O95302 570 aa4.27□□□□□ -1.73
SCN1A-208ENST00000625916 SNRPA1P09661 255 aaKnown RBP4.27□□□□□ -1.73
SCN1A-208ENST00000625916 SIM1P81133 766 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-208ENST00000625916 CT83Q5H943 113 aa4.27□□□□□ -1.73
SCN1A-208ENST00000625916 FAM47AQ5JRC9 791 aa4.27□□□□□ -1.73
SCN1A-208ENST00000625916 PITRM1Q5JRX3 1037 aa4.27□□□□□ -1.73
SCN1A-208ENST00000625916 ZNF362Q5T0B9 420 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-208ENST00000625916 BROXQ5VW32 411 aa4.27□□□□□ -1.73
SCN1A-208ENST00000625916 Q6ZNX1 250 aa4.27□□□□□ -1.73
SCN1A-208ENST00000625916 FKBP9P1Q75LS8 142 aa4.27□□□□□ -1.73
SCN1A-208ENST00000625916 AHI1Q8N157 1196 aa4.27□□□□□ -1.73
SCN1A-208ENST00000625916 ZSWIM1Q9BR11 485 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms