RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 MFSD14AQ96MC6 490 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 ACBD3Q9H3P7 528 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 GDF3Q9NR23 364 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 TMEM59LQ9UK28 342 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 MAFBQ9Y5Q3 323 aaPredicted RBP11.44□□□□□ -0.58
CUX1-221ENST00000622516 ZNF233A6NK53 670 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 P4HA2O15460 535 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 TTI1O43156 1089 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 FARP2O94887 1054 aaPredicted RBP11.44□□□□□ -0.58
CUX1-221ENST00000622516 KRT14P02533 472 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 GJB1P08034 283 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 TCF7P36402 384 aaPredicted RBP11.44□□□□□ -0.58
CUX1-221ENST00000622516 EPHB4P54760 987 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 TNNC1P63316 161 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 FMO1Q01740 532 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 HSDL1Q3SXM5 330 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 BRDTQ58F21 947 aaPredicted RBP11.44□□□□□ -0.58
CUX1-221ENST00000622516 SH3D19Q5HYK7 790 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 CCDC125Q86Z20 511 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 LRRC71Q8N4P6 559 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 DEPTORQ8TB45 409 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 ACTRT1Q8TDG2 376 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 SLC7A3Q8WY07 619 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 NT5C1BQ96P26 610 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 ASCC2Q9H1I8 757 aaPredicted RBP11.44□□□□□ -0.58
CUX1-221ENST00000622516 VIPAS39Q9H9C1 493 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 DDX3YO15523 660 aaKnown RBP11.43□□□□□ -0.58
CUX1-221ENST00000622516 SRGAP2CP0DJJ0 459 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 STRN3Q13033 797 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 DAB2IPQ5VWQ8 1189 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 KCTD16Q68DU8 428 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 ZBTB33Q86T24 672 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 CDR2LQ86X02 465 aaPredicted RBP11.43□□□□□ -0.58
CUX1-221ENST00000622516 CHST13Q8NET6 341 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 TRAPPC12Q8WVT3 735 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 SHC3Q92529 594 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 GLG1Q92896 1179 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 COPS5Q92905 334 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 FAM212AQ96EL1 285 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 FBXL18Q96ME1 805 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 FNBP1Q96RU3 617 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 ERVK-5Q9HDB9 667 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 AGO2Q9UKV8 859 aaKnown RBP11.43□□□□□ -0.58
CUX1-221ENST00000622516 DKC1O60832 514 aaKnown RBP eCLIP11.43□□□□□ -0.581e-7■■■■■ 34.5
CUX1-221ENST00000622516 STAT5BP51692 787 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 GPC5P78333 572 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 GLE1Q53GS7 698 aaKnown RBP11.43□□□□□ -0.58
CUX1-221ENST00000622516 TTC19Q6DKK2 380 aaPredicted RBP11.43□□□□□ -0.58
CUX1-221ENST00000622516 SLC17A8Q8NDX2 589 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 DNERQ8NFT8 737 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 FBXO41Q8TF61 875 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 RNPC3Q96LT9 517 aaKnown RBP11.43□□□□□ -0.58
CUX1-221ENST00000622516 TRIM7Q9C029 511 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 NEUROG2Q9H2A3 272 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 DPH5Q9H2P9 285 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 C17orf75Q9HAS0 396 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 ADARB2Q9NS39 739 aaKnown RBP11.43□□□□□ -0.58
CUX1-221ENST00000622516 NCANO14594 1321 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 MYCNP04198 464 aaPredicted RBP11.43□□□□□ -0.58
CUX1-221ENST00000622516 CFHP08603 1231 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 CAPN2P17655 700 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 COMTP21964 271 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 RFX1P22670 979 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 AARSP49588 968 aaKnown RBP eCLIP11.43□□□□□ -0.582e-6■■■■■ 51.2
CUX1-221ENST00000622516 GPC3P51654 580 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 TDRD10Q5VZ19 366 aaKnown RBP11.43□□□□□ -0.58
CUX1-221ENST00000622516 CRELD2Q6UXH1 353 aaPredicted RBP11.43□□□□□ -0.58
CUX1-221ENST00000622516 RIOX2Q8IUF8 465 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 CPA5Q8WXQ8 436 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 ARL8AQ96BM9 186 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 TRIM51Q9BSJ1 452 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 TCHPQ9BT92 498 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 ISCUQ9H1K1 167 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 PORCNQ9H237 461 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 RABEP2Q9H5N1 569 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 MED4Q9NPJ6 270 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 PPP2R3BQ9Y5P8 575 aa11.43□□□□□ -0.58
CUX1-221ENST00000622516 MAPK13O15264 365 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 DAPK3O43293 454 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 FLT3P36888 993 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 TNFSF9P41273 254 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 PDE6CP51160 858 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 SNRPFP62306 86 aaKnown RBP11.42□□□□□ -0.58
CUX1-221ENST00000622516 MKRN3Q13064 507 aaKnown RBP11.42□□□□□ -0.58
CUX1-221ENST00000622516 FAM43BQ6ZT52 329 aaPredicted RBP11.42□□□□□ -0.58
CUX1-221ENST00000622516 PASD1Q8IV76 773 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 FBXO16Q8IX29 292 aaPredicted RBP11.42□□□□□ -0.58
CUX1-221ENST00000622516 TMEM174Q8WUU8 243 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 PRPF31Q8WWY3 499 aaKnown RBP11.42□□□□□ -0.58
CUX1-221ENST00000622516 ZNF653Q96CK0 615 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 ZIM3Q96PE6 472 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 NUP85Q9BW27 656 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 DHX33Q9H6R0 707 aaKnown RBP11.42□□□□□ -0.58
CUX1-221ENST00000622516 MCM3APO60318 1980 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 RTN2O75298 545 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 ATG7O95352 703 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 GJC2Q5T442 439 aaPredicted RBP11.42□□□□□ -0.58
CUX1-221ENST00000622516 EMBQ6PCB8 327 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 TMEM130Q8N3G9 435 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 SH2D3CQ8N5H7 860 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms