RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 MTUS1Q9ULD2 1270 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 ATAD5Q96QE3 1844 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 FOXO6A8MYZ6 492 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 TRAPPC3O43617 180 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 HARSP12081 509 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 TNNI1P19237 187 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 CXCL9Q07325 125 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 ADCY1Q08828 1119 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 SPOPLQ6IQ16 392 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 C11orf63Q6NUN7 778 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 SLC13A5Q86YT5 568 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 CCDC50Q8IVM0 306 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 FBXL13Q8NEE6 735 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 ATG4CQ96DT6 458 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 PDCD2LQ9BRP1 358 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 MTRF1LQ9UGC7 380 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 EXOC7Q9UPT5 735 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 FAM187AA6NFU0 413 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 CHN1P15882 459 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 MAPK4P31152 587 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 PTGIRP43119 386 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 CCDC121Q6ZUS5 278 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 HOOK3Q86VS8 718 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 CCDC114Q96M63 670 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 MLXIPLQ9NP71 852 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 GRHL1Q9NZI5 618 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 ASIC3Q9UHC3 531 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 DPEP1P16444 411 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 ACOT2P49753 483 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 MNAT1P51948 309 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 RWDD2BP57060 319 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 ALCAMQ13740 583 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 AGBL2Q5U5Z8 902 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 HELQQ8TDG4 1101 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 WNT8AQ9H1J5 351 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 EPB41L4BQ9H329 900 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 SLC38A10Q9HBR0 1119 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 USTQ9Y2C2 406 aa13.86□□□□□ -0.19
CCDC88A-214ENST00000621814 HMGB2P26583 209 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 COILP38432 576 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 MYBPC2Q14324 1141 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 LONRF1Q17RB8 773 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 MTERF2Q49AM1 385 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 SGO2Q562F6 1265 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 C4orf19Q8IY42 314 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 KIFAP3Q92845 792 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 SEC16BQ96JE7 1060 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 PWWP2AQ96N64 755 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 MYOZ2Q9NPC6 264 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 PXMP2Q9NR77 195 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 PFASO15067 1338 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 RPTORQ8N122 1335 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 BRWD3Q6RI45 1802 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 BHMG1C9JSJ3 638 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 WDR46O15213 610 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 P4HA2O15460 535 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 ZBED4O75132 1171 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 SCP2P22307 547 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 NF2P35240 595 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 CDR1P51861 262 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 NCKAP1LP55160 1127 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 CDR2Q01850 454 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 CALCOCO2Q13137 446 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 LRRC14Q15048 493 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 PPP2R5EQ16537 467 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 SEZ6Q53EL9 994 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 SAMD7Q7Z3H4 446 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 RTKN2Q8IZC4 609 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 SHC3Q92529 594 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 IWS1Q96ST2 819 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 DDX23Q9BUQ8 820 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 ZNRF3Q9ULT6 936 aa13.85□□□□□ -0.19
CCDC88A-214ENST00000621814 ADGRA3Q8IWK6 1321 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 PLA2G6O60733 806 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 HNRNPH1P31943 449 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 EMC10Q5UCC4 262 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 SLC39A4Q6P5W5 647 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 DHX37Q8IY37 1157 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 ZKSCAN4Q969J2 545 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 RPS6KC1Q96S38 1066 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 PRMT1Q99873 361 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 TAOK3Q9H2K8 898 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 TMEM8AQ9HCN3 771 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 CHST7Q9NS84 486 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 RNF146Q9NTX7 359 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 PCDHA10Q9Y5I2 948 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 PODXLO00592 558 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 ZNF862O60290 1169 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 TBC1D12O60347 775 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 GJB6O95452 261 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 ECEL1O95672 775 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 RRM1P23921 792 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 CTNNA2P26232 953 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 EIF3BP55884 814 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 SPRED3Q2MJR0 410 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 PRUNE1Q86TP1 453 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 CACNA2D3Q8IZS8 1091 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 C1orf131Q8NDD1 294 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 ATP8B3O60423 1300 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 NR3C2P08235 984 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms