RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 C2CD6Q53TS8 623 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 MTMR12Q9C0I1 747 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 ZC3H4Q9UPT8 1303 aaKnown RBP16.91■□□□□ 0.3
CPSF1-213ENST00000620219 CALCAP01258 141 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 CETN2P41208 172 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 MAP2K5Q13163 448 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 MKRN4PQ13434 485 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-213ENST00000620219 GRIK4Q16099 956 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 COBLL1Q53SF7 1204 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 GLRA4Q5JXX5 417 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 TATDN2Q93075 761 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 MAML3Q96JK9 1138 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 L2HGDHQ9H9P8 463 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 TMEM8AQ9HCN3 771 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 QSER1Q2KHR3 1735 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 TADA3O75528 432 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 WEE2P0C1S8 567 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 CTNNA2P26232 953 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 ICAM3P32942 547 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 CYP24A1Q07973 514 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 LIN9Q5TKA1 542 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 EPM2AIP1Q7L775 607 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-213ENST00000620219 GOLGA8SH3BPF8 625 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 B4GALT5O43286 388 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 MAPTP10636 758 aaKnown RBP16.91■□□□□ 0.3
CPSF1-213ENST00000620219 TNNC1P63316 161 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 ZNF667Q5HYK9 610 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 PARD3BQ8TEW8 1205 aa16.91■□□□□ 0.3
CPSF1-213ENST00000620219 ANKRD62A6NC57 917 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 TOM1L1O75674 476 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 BMT2Q1RMZ1 405 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 ARHGEF19Q8IW93 802 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 BAP1Q92560 729 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 ZNF263O14978 683 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 FIGNQ5HY92 759 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 RSPH3Q86UC2 560 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 CEP120Q8N960 986 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 HVCN1Q96D96 273 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 KIF12Q96FN5 646 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 ATMINO43313 823 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-213ENST00000620219 CNMDO75829 334 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 ZNF571Q7Z3V5 609 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-213ENST00000620219 DNAJB3Q8WWF6 145 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 TTYH3Q9C0H2 523 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 MAFBQ9Y5Q3 323 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-213ENST00000620219 SLC26A2P50443 739 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 NOA1Q8NC60 698 aaKnown RBP16.9■□□□□ 0.3
CPSF1-213ENST00000620219 KLK14Q9P0G3 267 aa16.9■□□□□ 0.3
CPSF1-213ENST00000620219 RARBP10826 455 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 ORC1Q13415 861 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 CFAP221Q4G0U5 840 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 ZNF484Q5JVG2 852 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 C11orf70Q9BRQ4 267 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 JRKLQ9Y4A0 524 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 LRRIQ3A6PVS8 624 aaPredicted RBP16.89■□□□□ 0.29
CPSF1-213ENST00000620219 IGF2BP3O00425 579 aaKnown RBP eCLIP16.89■□□□□ 0.29
CPSF1-213ENST00000620219 TLR3O15455 904 aaKnown RBP16.89■□□□□ 0.29
CPSF1-213ENST00000620219 CXCL8P10145 99 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 P4HA1P13674 534 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 GARTP22102 1010 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 GALCP54803 685 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 MEA1Q16626 185 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 WHAMMP3Q1A5X7 153 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 C8orf74Q6P047 294 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 CXCL17Q6UXB2 119 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 INPP5FQ9Y2H2 1132 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 SSU72P8A0A1W2PR75 194 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 SLC15A5A6NIM6 579 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 MAFO75444 373 aaPredicted RBP16.89■□□□□ 0.29
CPSF1-213ENST00000620219 TNFSF9P41273 254 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 SLC7A5Q01650 507 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 PLCB3Q01970 1234 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 RPS6KC1Q96S38 1066 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 PRMT7Q9NVM4 692 aaPredicted RBP16.89■□□□□ 0.29
CPSF1-213ENST00000620219 ADGRA3Q8IWK6 1321 aa16.89■□□□□ 0.29
CPSF1-213ENST00000620219 NOL4O94818 638 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 NCKAP1LP55160 1127 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 NOP14P78316 857 aaKnown RBP16.88■□□□□ 0.29
CPSF1-213ENST00000620219 CRHR2Q13324 411 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 ZBTB41Q5SVQ8 909 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 NPLOC4Q8TAT6 608 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 SLC20A1Q8WUM9 679 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 AGPAT1Q99943 283 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 GOLGA6L10A0A0M3HER8 536 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 OGTO15294 1046 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 ASAP2O43150 1006 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 TLR2O60603 784 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 GNAT1P11488 350 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 SMPD1P17405 629 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 BPIFB4P59827 614 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 IRX5P78411 483 aaPredicted RBP16.88■□□□□ 0.29
CPSF1-213ENST00000620219 PPARDQ03181 441 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 MS4A14Q96JA4 679 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 ACAP3Q96P50 834 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 AGAP1Q9UPQ3 857 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 SIPA1L1O43166 1804 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 SGPL1O95470 568 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 FLT3LGP49771 235 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 CPT1AP50416 773 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 GPR161Q8N6U8 529 aaKnown RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms