RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 THP07101 528 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 WEE2P0C1S8 567 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 AKAP5P24588 427 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 CCT6AP40227 531 aaKnown RBP13.15□□□□□ -0.3
UPF3B-204ENST00000619445 CLCN5P51795 746 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 GUCY1B3Q02153 619 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 ZNF174Q15697 407 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 POTEGQ6S5H5 508 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 MAEAQ7L5Y9 396 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 KCTD17Q8N5Z5 321 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 GSTCDQ8NEC7 633 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 PRSS33Q8NF86 280 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 WDR6Q9NNW5 1121 aaKnown RBP13.15□□□□□ -0.3
UPF3B-204ENST00000619445 GPRC5CQ9NQ84 441 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 MIOSQ9NXC5 875 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.15□□□□□ -0.3
UPF3B-204ENST00000619445 LRWD1Q9UFC0 647 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 CDH22Q9UJ99 828 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 U2AF2P26368 475 aaKnown RBP eCLIP13.14□□□□□ -0.312e-7■□□□□ 9.2
UPF3B-204ENST00000619445 ST3GAL1Q11201 340 aa13.14□□□□□ -0.31
UPF3B-204ENST00000619445 IER5LQ5T953 404 aa13.14□□□□□ -0.31
UPF3B-204ENST00000619445 RTL10Q7L3V2 364 aa13.14□□□□□ -0.31
UPF3B-204ENST00000619445 RIN2Q8WYP3 895 aaPredicted RBP13.14□□□□□ -0.31
UPF3B-204ENST00000619445 SMG7Q92540 1137 aaKnown RBP13.14□□□□□ -0.31
UPF3B-204ENST00000619445 PDZD7Q9H5P4 517 aa13.14□□□□□ -0.31
UPF3B-204ENST00000619445 C17orf75Q9HAS0 396 aa13.14□□□□□ -0.31
UPF3B-204ENST00000619445 PIDD1Q9HB75 910 aa13.14□□□□□ -0.31
UPF3B-204ENST00000619445 ZFP37Q9Y6Q3 630 aaPredicted RBP13.14□□□□□ -0.31
UPF3B-204ENST00000619445 CLUHO75153 1309 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 PLXNA3P51805 1871 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 RIF1Q5UIP0 2472 aaKnown RBP13.13□□□□□ -0.31
UPF3B-204ENST00000619445 ZFHX2Q9C0A1 2572 aaPredicted RBP13.13□□□□□ -0.31
UPF3B-204ENST00000619445 GALR2O43603 387 aaPredicted RBP13.13□□□□□ -0.31
UPF3B-204ENST00000619445 TRAPPC3O43617 180 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 PRPHP41219 470 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 TCF15Q12870 199 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 KRT79Q5XKE5 535 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 ASTLQ6HA08 431 aaPredicted RBP13.13□□□□□ -0.31
UPF3B-204ENST00000619445 TAS1R1Q7RTX1 841 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 PIK3R5Q8WYR1 880 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 UROC1Q96N76 676 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 TTPALQ9BTX7 342 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 TIPINQ9BVW5 301 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 GPR62Q9BZJ7 368 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 CCDC113Q9H0I3 377 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 BHMT2Q9H2M3 363 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 TOPORSQ9NS56 1045 aaPredicted RBP13.13□□□□□ -0.31
UPF3B-204ENST00000619445 KLK14Q9P0G3 267 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 EPS15L1Q9UBC2 864 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 DUSP12Q9UNI6 340 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 DNM3Q9UQ16 869 aa13.13□□□□□ -0.31
UPF3B-204ENST00000619445 RBM19Q9Y4C8 960 aaKnown RBP13.13□□□□□ -0.31
UPF3B-204ENST00000619445 PTPRZ1P23471 2315 aaPredicted RBP13.12□□□□□ -0.31
UPF3B-204ENST00000619445 DOCK8Q8NF50 2099 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 TMEM189-UBE2V1I3L0A0 370 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 K7ERI5 159 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 TGM5O43548 720 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 RECQL4O94761 1208 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 CENPBP07199 599 aaPredicted RBP13.12□□□□□ -0.31
UPF3B-204ENST00000619445 ASGR2P07307 311 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 HNRNPA1P09651 372 aaKnown RBP eCLIP13.12□□□□□ -0.31
UPF3B-204ENST00000619445 HOXA9P31269 272 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 GBP2P32456 591 aaPredicted RBP13.12□□□□□ -0.31
UPF3B-204ENST00000619445 VCPP55072 806 aaKnown RBP13.12□□□□□ -0.31
UPF3B-204ENST00000619445 LIN9Q5TKA1 542 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 ATF7IP2Q5U623 682 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 KANK3Q6NY19 840 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 LILRA6Q6PI73 481 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 CDR2LQ86X02 465 aaPredicted RBP13.12□□□□□ -0.31
UPF3B-204ENST00000619445 IGSF22Q8N9C0 903 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 SNX29Q8TEQ0 813 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 DRC1Q96MC2 740 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 RTP3Q9BQQ7 232 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 PRKD2Q9BZL6 878 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 NT5C3AQ9H0P0 336 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 KCNK12Q9HB15 430 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 FBXL21Q9UKT6 434 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 KIAA1024Q9UPX6 916 aa13.12□□□□□ -0.31
UPF3B-204ENST00000619445 A0A087WWV3 80 aa13.11□□□□□ -0.31
UPF3B-204ENST00000619445 ST18O60284 1047 aa13.11□□□□□ -0.31
UPF3B-204ENST00000619445 XYLBO75191 536 aa13.11□□□□□ -0.31
UPF3B-204ENST00000619445 ZMYND10O75800 440 aa13.11□□□□□ -0.31
UPF3B-204ENST00000619445 SEC24BO95487 1268 aa13.11□□□□□ -0.31
UPF3B-204ENST00000619445 YARSP54577 528 aaKnown RBP13.11□□□□□ -0.31
UPF3B-204ENST00000619445 PTGDRQ13258 359 aa13.11□□□□□ -0.31
UPF3B-204ENST00000619445 DMP1Q13316 513 aaPredicted RBP13.11□□□□□ -0.31
UPF3B-204ENST00000619445 RABEP1Q15276 862 aa13.11□□□□□ -0.31
UPF3B-204ENST00000619445 RILPL1Q5EBL4 403 aa13.11□□□□□ -0.31
UPF3B-204ENST00000619445 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.11□□□□□ -0.31
UPF3B-204ENST00000619445 PALB2Q86YC2 1186 aa13.11□□□□□ -0.31
UPF3B-204ENST00000619445 ATOH1Q92858 354 aaPredicted RBP13.11□□□□□ -0.31
UPF3B-204ENST00000619445 DDX19AQ9NUU7 478 aaKnown RBP13.11□□□□□ -0.31
UPF3B-204ENST00000619445 SLC38A7Q9NVC3 462 aa13.11□□□□□ -0.31
UPF3B-204ENST00000619445 SNTG2Q9NY99 539 aa13.11□□□□□ -0.31
UPF3B-204ENST00000619445 WNT16Q9UBV4 365 aa13.11□□□□□ -0.31
UPF3B-204ENST00000619445 TNFSF13BQ9Y275 285 aa13.11□□□□□ -0.31
UPF3B-204ENST00000619445 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.11□□□□□ -0.31
UPF3B-204ENST00000619445 PTGESO14684 152 aa13.1□□□□□ -0.31
UPF3B-204ENST00000619445 POU2F2P09086 479 aa13.1□□□□□ -0.31
UPF3B-204ENST00000619445 PSMD5Q16401 504 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms