RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 GJB5O95377 273 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 NPTXRO95502 500 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 PIGRP01833 764 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 ITGA4P13612 1032 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 EEF1GP26641 437 aaKnown RBP10.99□□□□□ -0.65
UPF1-213ENST00000601981 HOXA11P31270 313 aaPredicted RBP10.99□□□□□ -0.65
UPF1-213ENST00000601981 DEFB103AP81534 67 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 LRRC63Q05C16 580 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 NOLC1Q14978 699 aaKnown RBP eCLIP10.99□□□□□ -0.65
UPF1-213ENST00000601981 TCTN1Q2MV58 587 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 LRIT3Q3SXY7 679 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 FILIP1LQ4L180 1135 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 SLFN12LQ6IEE8 588 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 CENPPQ6IPU0 288 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 MPZL3Q6UWV2 235 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.99□□□□□ -0.65
UPF1-213ENST00000601981 TMC6Q7Z403 805 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 ECHDC2Q86YB7 292 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 HERC6Q8IVU3 1022 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 FAM114A1Q8IWE2 563 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 RNF169Q8NCN4 708 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 CCDC150Q8NCX0 1101 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 LINC01599Q8WXQ3 324 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 NAP1L5Q96NT1 182 aaPredicted RBP10.99□□□□□ -0.65
UPF1-213ENST00000601981 FIZ1Q96SL8 496 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 YME1L1Q96TA2 773 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 ACO2Q99798 780 aaKnown RBP10.99□□□□□ -0.65
UPF1-213ENST00000601981 DUSP9Q99956 384 aaKnown RBP10.99□□□□□ -0.65
UPF1-213ENST00000601981 TARS2Q9BW92 718 aaKnown RBP10.99□□□□□ -0.65
UPF1-213ENST00000601981 KCNF1Q9H3M0 494 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 PDZD7Q9H5P4 517 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 INTS13Q9NVM9 706 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 ANKFY1Q9P2R3 1169 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 INSL6Q9Y581 213 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 PCDHB2Q9Y5E7 798 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 RALGAPA2Q2PPJ7 1873 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 LAMA3Q16787 3333 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 TRIM49BA6NDI0 452 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 LRRC10BA6NIK2 292 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 KCNJ18B7U540 433 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 PPP1R37O75864 691 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 FGFR1OPO95684 399 aaKnown RBP10.98□□□□□ -0.65
UPF1-213ENST00000601981 MYBP10242 640 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 MCF2P10911 925 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 PMS1P54277 932 aaKnown RBP10.98□□□□□ -0.65
UPF1-213ENST00000601981 YARSP54577 528 aaKnown RBP10.98□□□□□ -0.65
UPF1-213ENST00000601981 SNRPFP62306 86 aaKnown RBP10.98□□□□□ -0.65
UPF1-213ENST00000601981 FAM189BP81408 668 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 SMAD3P84022 425 aaKnown RBP10.98□□□□□ -0.65
UPF1-213ENST00000601981 KCNJ12Q14500 433 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 NR1I3Q14994 352 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 KRT31Q15323 416 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 ZC2HC1CQ53FD0 456 aaPredicted RBP10.98□□□□□ -0.65
UPF1-213ENST00000601981 HSP90AA4PQ58FG1 418 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 TCP11X2Q5H9J9 407 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 FAM117BQ6P1L5 589 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 GLB1LQ6UWU2 654 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 HS2ST1Q7LGA3 356 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 TAS1R3Q7RTX0 852 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 RTN4RL1Q86UN2 441 aaPredicted RBP10.98□□□□□ -0.65
UPF1-213ENST00000601981 CSGALNACT2Q8N6G5 542 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 GOLGA5Q8TBA6 731 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 URGCPQ8TCY9 931 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 HPS3Q969F9 1004 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 RAD9AQ99638 391 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 TSG101Q99816 390 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 CCDC94Q9BW85 323 aaPredicted RBP10.98□□□□□ -0.65
UPF1-213ENST00000601981 MRPL9Q9BYD2 267 aaKnown RBP10.98□□□□□ -0.65
UPF1-213ENST00000601981 SEMA6BQ9H3T3 888 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 TOPORSQ9NS56 1045 aaPredicted RBP10.98□□□□□ -0.65
UPF1-213ENST00000601981 CGNQ9P2M7 1197 aaKnown RBP10.98□□□□□ -0.65
UPF1-213ENST00000601981 PCDHA11Q9Y5I1 949 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 ZMYM2Q9UBW7 1377 aa10.98□□□□□ -0.65
UPF1-213ENST00000601981 PDCD11Q14690 1871 aaKnown RBP10.98□□□□□ -0.65
UPF1-213ENST00000601981 LAMA2P24043 3122 aaKnown RBP10.97□□□□□ -0.65
UPF1-213ENST00000601981 CARNS1A5YM72 827 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 KIAA0391O15091 583 aaKnown RBP10.97□□□□□ -0.65
UPF1-213ENST00000601981 ZNF500O60304 480 aaPredicted RBP10.97□□□□□ -0.65
UPF1-213ENST00000601981 PRPF6O94906 941 aaKnown RBP10.97□□□□□ -0.65
UPF1-213ENST00000601981 HARSP12081 509 aaKnown RBP10.97□□□□□ -0.65
UPF1-213ENST00000601981 COPB1P53618 953 aaKnown RBP10.97□□□□□ -0.65
UPF1-213ENST00000601981 ZCWPW2Q504Y3 356 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 UBXN11Q5T124 520 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 ANKRD40Q6AI12 368 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 FILIP1Q7Z7B0 1213 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 MRPL10Q7Z7H8 261 aaKnown RBP10.97□□□□□ -0.65
UPF1-213ENST00000601981 IRF2BP1Q8IU81 584 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 ZNF507Q8TCN5 953 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 POMGNT1Q8WZA1 660 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 RPS6KC1Q96S38 1066 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 STRA6Q9BX79 667 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 SRRTQ9BXP5 876 aaKnown RBP10.97□□□□□ -0.65
UPF1-213ENST00000601981 EIF2AQ9BY44 585 aaKnown RBP10.97□□□□□ -0.65
UPF1-213ENST00000601981 TMEM117Q9H0C3 514 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 GBP3Q9H0R5 595 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 RSAD1Q9HA92 442 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 RTN4Q9NQC3 1192 aaKnown RBP10.97□□□□□ -0.65
UPF1-213ENST00000601981 RRAGDQ9NQL2 400 aaPredicted RBP10.97□□□□□ -0.65
UPF1-213ENST00000601981 MAGEC2Q9UBF1 373 aaPredicted RBP10.97□□□□□ -0.65
UPF1-213ENST00000601981 PARP2Q9UGN5 583 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms