RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ECHDC2Q86YB7 292 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 MAB21L3Q8N8X9 362 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 ZSWIM2Q8NEG5 633 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 SPDYE1Q8NFV5 336 aaPredicted RBP19.64■□□□□ 0.73
UPF1-210ENST00000600689 SLCO1B3Q9NPD5 702 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 MYO3BQ8WXR4 1341 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 hCG_1984214I3L0E3 225 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 PODXLO00592 558 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 PIAS1O75925 651 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 RPA1P27694 616 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 RIPK1Q13546 671 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 GRIPAP1Q4V328 841 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 ODR4Q5SWX8 454 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 SH3BP5LQ7L8J4 393 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 SLC13A5Q86YT5 568 aaPredicted RBP19.63■□□□□ 0.73
UPF1-210ENST00000600689 FAM178BQ8IXR5 827 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 ZNF713Q8N859 430 aaPredicted RBP19.63■□□□□ 0.73
UPF1-210ENST00000600689 CCHCR1Q8TD31 782 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 SAAL1Q96ER3 474 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 PCDHB18PQ96TA0 734 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 PITPNM3Q9BZ71 974 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 CHRNB2P17787 502 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 RAD23BP54727 409 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 SARNPP82979 210 aaKnown RBP19.63■□□□□ 0.73
UPF1-210ENST00000600689 SPIRE1Q08AE8 756 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 DYDC2Q96IM9 177 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 NUP85Q9BW27 656 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 NKIRAS1Q9NYS0 192 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 FAM198AQ9UFP1 575 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 QSER1Q2KHR3 1735 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 EMSYQ7Z589 1322 aa19.63■□□□□ 0.73
UPF1-210ENST00000600689 GOLGA8IPA6NC78 632 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 GOLGA8JA6NMD2 632 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 ECE2O60344 883 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 HIP1RO75146 1068 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 ADCY8P40145 1251 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 CGB2Q6NT52 195 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 LLGL2Q6P1M3 1020 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 SLFN12Q8IYM2 578 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 PPM1KQ8N3J5 372 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 TRIM7Q9C029 511 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 PLSCR1O15162 318 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 MSH4O15457 936 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 CYP26A1O43174 497 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 EEF2P13639 858 aaKnown RBP19.62■□□□□ 0.73
UPF1-210ENST00000600689 SSR1P43307 286 aaKnown RBP19.62■□□□□ 0.73
UPF1-210ENST00000600689 GPC5P78333 572 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 MTM1Q13496 603 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 PPP2R5EQ16537 467 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 ZNF483Q8TF39 744 aaPredicted RBP19.62■□□□□ 0.73
UPF1-210ENST00000600689 ZNF653Q96CK0 615 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 MYLK2Q9H1R3 596 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 AAASQ9NRG9 546 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 PARP2Q9UGN5 583 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 CNOT7Q9UIV1 285 aaKnown RBP19.62■□□□□ 0.73
UPF1-210ENST00000600689 ATF5Q9Y2D1 282 aaPredicted RBP19.62■□□□□ 0.73
UPF1-210ENST00000600689 GDF11O95390 407 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 SSTR3P32745 418 aaPredicted RBP19.62■□□□□ 0.73
UPF1-210ENST00000600689 ITGA8P53708 1063 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 PODNQ7Z5L7 613 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 ETNPPLQ8TBG4 499 aa19.62■□□□□ 0.73
UPF1-210ENST00000600689 POC1B-GALNT4F8VUJ3 575 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 MEIS2O14770 477 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 CBX6O95503 412 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 FOXN2P32314 431 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 AOC3Q16853 763 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 GALNTL6Q49A17 601 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 MIS18BP1Q6P0N0 1132 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 ART4Q93070 314 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 ZDHHC15Q96MV8 337 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 WDR91A4D1P6 747 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 SMNDC1O75940 238 aaKnown RBP eCLIP19.61■□□□□ 0.73
UPF1-210ENST00000600689 DACT2Q5SW24 774 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 MIGA2Q7L4E1 593 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 RHOT2Q8IXI1 618 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 ZNF564Q8TBZ8 553 aaPredicted RBP19.61■□□□□ 0.73
UPF1-210ENST00000600689 RXFP1Q9HBX9 757 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 DIS3Q9Y2L1 958 aaKnown RBP19.61■□□□□ 0.73
UPF1-210ENST00000600689 PCDHA3Q9Y5H8 950 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 SLX4Q8IY92 1834 aa19.61■□□□□ 0.73
UPF1-210ENST00000600689 ZMYM2Q9UBW7 1377 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 SLC16A3O15427 465 aaKnown RBP19.6■□□□□ 0.73
UPF1-210ENST00000600689 ZNF131P52739 623 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 ZFYVE27Q5T4F4 411 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 SLC47A2Q86VL8 602 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 ANKLE1Q8NAG6 615 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 TTC8Q8TAM2 541 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 UTP4Q969X6 686 aaKnown RBP19.6■□□□□ 0.73
UPF1-210ENST00000600689 ARHGEF3Q9NR81 526 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 AGPAT3Q9NRZ7 376 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 OAS1P00973 400 aaKnown RBP19.6■□□□□ 0.73
UPF1-210ENST00000600689 C4orf33Q8N1A6 199 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 CKAP2Q8WWK9 683 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 CCDC127Q96BQ5 260 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 NAF1Q96HR8 494 aaKnown RBP19.6■□□□□ 0.73
UPF1-210ENST00000600689 SPATS2LQ9NUQ6 558 aaKnown RBP19.6■□□□□ 0.73
UPF1-210ENST00000600689 PCYOX1Q9UHG3 505 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 ZBTB21Q9ULJ3 1066 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.6■□□□□ 0.73
UPF1-210ENST00000600689 RASA4BC9J798 803 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms