RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 DPP7Q9UHL4 492 aa19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 NOL7Q9UMY1 257 aaKnown RBP19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 TGM5O43548 720 aa19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 RPA1P27694 616 aa19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 RBM25P49756 843 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 FAM171A1Q5VUB5 890 aa19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 EEF1DP3Q658K8 133 aa19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 C15orf39Q6ZRI6 1047 aa19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 RSAD2Q8WXG1 361 aa19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 IFT74Q96LB3 600 aa19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 PRIMPOLQ96LW4 560 aa19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 ADPGKQ9BRR6 497 aa19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 LLPHQ9BRT6 129 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 CHST7Q9NS84 486 aa19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 LRWD1Q9UFC0 647 aa19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 KIAA1024Q9UPX6 916 aa19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 DENND4AQ7Z401 1863 aa19.41■□□□□ 0.7
SHKBP1-223ENST00000600552 NARSO43776 548 aaKnown RBP19.4■□□□□ 0.7
SHKBP1-223ENST00000600552 RECQL4O94761 1208 aa19.4■□□□□ 0.7
SHKBP1-223ENST00000600552 TUSC3Q13454 348 aa19.4■□□□□ 0.7
SHKBP1-223ENST00000600552 ECM1Q16610 540 aa19.4■□□□□ 0.7
SHKBP1-223ENST00000600552 ERICH6BQ5W0A0 696 aa19.4■□□□□ 0.7
SHKBP1-223ENST00000600552 CDCA2Q69YH5 1023 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-223ENST00000600552 ASTLQ6HA08 431 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-223ENST00000600552 PPP4R3CPQ6ZMV5 832 aa19.4■□□□□ 0.7
SHKBP1-223ENST00000600552 RNF168Q8IYW5 571 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-223ENST00000600552 FBXO18Q8NFZ0 1043 aa19.4■□□□□ 0.7
SHKBP1-223ENST00000600552 ZSCAN31Q96LW9 406 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-223ENST00000600552 BHMT2Q9H2M3 363 aa19.4■□□□□ 0.7
SHKBP1-223ENST00000600552 WDR6Q9NNW5 1121 aaKnown RBP19.4■□□□□ 0.7
SHKBP1-223ENST00000600552 CCDC169A6NNP5 214 aa19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 GALR2O43603 387 aaPredicted RBP19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 N4BP1O75113 896 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 EFEMP2O95967 443 aa19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 EDN1P05305 212 aa19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 THP07101 528 aa19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 CFHP08603 1231 aa19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 RFX1P22670 979 aa19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 PPP2R5AQ15172 486 aa19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 ZRSR1Q15695 479 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 RTP2Q5QGT7 225 aa19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 HAUS3Q68CZ6 603 aa19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 GET4Q7L5D6 327 aaPredicted RBP19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 CMASQ8NFW8 434 aaPredicted RBP19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 STAMQ92783 540 aa19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 MYADMQ96S97 322 aa19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 NT5C3AQ9H0P0 336 aa19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 DDX19AQ9NUU7 478 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 CLUHO75153 1309 aa19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 SF3B1O75533 1304 aaKnown RBP eCLIP19.39■□□□□ 0.69
SHKBP1-223ENST00000600552 ACKR2O00590 384 aa19.38■□□□□ 0.69
SHKBP1-223ENST00000600552 PTGESO14684 152 aa19.38■□□□□ 0.69
SHKBP1-223ENST00000600552 KIF4AO95239 1232 aa19.38■□□□□ 0.69
SHKBP1-223ENST00000600552 NAMPTP43490 491 aa19.38■□□□□ 0.69
SHKBP1-223ENST00000600552 HMGN5P82970 282 aaKnown RBP19.38■□□□□ 0.69
SHKBP1-223ENST00000600552 FAM187BQ17R55 369 aa19.38■□□□□ 0.69
SHKBP1-223ENST00000600552 GLRA4Q5JXX5 417 aa19.38■□□□□ 0.69
SHKBP1-223ENST00000600552 SIX5Q8N196 739 aa19.38■□□□□ 0.69
SHKBP1-223ENST00000600552 SNX29Q8TEQ0 813 aa19.38■□□□□ 0.69
SHKBP1-223ENST00000600552 ZNF707Q96C28 371 aaPredicted RBP19.38■□□□□ 0.69
SHKBP1-223ENST00000600552 TTPALQ9BTX7 342 aa19.38■□□□□ 0.69
SHKBP1-223ENST00000600552 IRF2BPLQ9H1B7 796 aa19.38■□□□□ 0.69
SHKBP1-223ENST00000600552 PLEKHA4Q9H4M7 779 aa19.38■□□□□ 0.69
SHKBP1-223ENST00000600552 MTCL1Q9Y4B5 1905 aaKnown RBP19.37■□□□□ 0.69
SHKBP1-223ENST00000600552 GFRA3O60609 400 aa19.37■□□□□ 0.69
SHKBP1-223ENST00000600552 OSTNP61366 133 aa19.37■□□□□ 0.69
SHKBP1-223ENST00000600552 PTGDRQ13258 359 aa19.37■□□□□ 0.69
SHKBP1-223ENST00000600552 PSMD5Q16401 504 aa19.37■□□□□ 0.69
SHKBP1-223ENST00000600552 NT5DC1Q5TFE4 455 aa19.37■□□□□ 0.69
SHKBP1-223ENST00000600552 MCTP1Q6DN14 999 aa19.37■□□□□ 0.69
SHKBP1-223ENST00000600552 CCDC113Q9H0I3 377 aa19.37■□□□□ 0.69
SHKBP1-223ENST00000600552 FNIP2Q9P278 1114 aa19.37■□□□□ 0.69
SHKBP1-223ENST00000600552 POLIQ9UNA4 740 aa19.37■□□□□ 0.69
SHKBP1-223ENST00000600552 DOCK6Q96HP0 2047 aa19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 PP2D1A8MPX8 630 aa19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 E9PMD0 336 aa19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 K7ERI5 159 aa19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 PI15O43692 258 aa19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 CREMQ03060 361 aa19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 ORC2Q13416 577 aaPredicted RBP19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 ATF7IP2Q5U623 682 aa19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 C4orf32Q8N8J7 132 aa19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 HDAC7Q8WUI4 952 aa19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 PRKD2Q9BZL6 878 aa19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 SH2B1Q9NRF2 756 aaPredicted RBP19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 IGSF9Q9P2J2 1179 aa19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 CA14Q9ULX7 337 aa19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 DUSP12Q9UNI6 340 aa19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 PCDHB6Q9Y5E3 794 aa19.36■□□□□ 0.69
SHKBP1-223ENST00000600552 IGFBP6P24592 240 aaPredicted RBP19.35■□□□□ 0.69
SHKBP1-223ENST00000600552 CDC25AP30304 524 aa19.35■□□□□ 0.69
SHKBP1-223ENST00000600552 FXR2P51116 673 aaKnown RBP eCLIP19.35■□□□□ 0.69
SHKBP1-223ENST00000600552 EFNA5P52803 228 aa19.35■□□□□ 0.69
SHKBP1-223ENST00000600552 PEX3P56589 373 aa19.35■□□□□ 0.69
SHKBP1-223ENST00000600552 NTHL1P78549 312 aa19.35■□□□□ 0.69
SHKBP1-223ENST00000600552 DCAF4L1Q3SXM0 396 aa19.35■□□□□ 0.69
SHKBP1-223ENST00000600552 PPM1LQ5SGD2 360 aa19.35■□□□□ 0.69
SHKBP1-223ENST00000600552 LIN9Q5TKA1 542 aa19.35■□□□□ 0.69
SHKBP1-223ENST00000600552 LILRA6Q6PI73 481 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms