RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ZSWIM4Q9H7M6 989 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 ARHGEF3Q9NR81 526 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.81□□□□□ -1.32
VRK3-220ENST00000600259 BMP2KQ9NSY1 1161 aaPredicted RBP6.81□□□□□ -1.32
VRK3-220ENST00000600259 CACNG4Q9UBN1 327 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 ADAM28Q9UKQ2 775 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 MTF2Q9Y483 593 aaPredicted RBP6.81□□□□□ -1.32
VRK3-220ENST00000600259 ZFP37Q9Y6Q3 630 aaPredicted RBP6.81□□□□□ -1.32
VRK3-220ENST00000600259 NUMBLQ9Y6R0 609 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 KMT2BQ9UMN6 2715 aaPredicted RBP6.81□□□□□ -1.32
VRK3-220ENST00000600259 DOCK6Q96HP0 2047 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 A0A087WWV3 80 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 FAM205CA6NFA0 338 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 PTGESO14684 152 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 GCFC2P16383 781 aaKnown RBP6.8□□□□□ -1.32
VRK3-220ENST00000600259 FSHRP23945 695 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 PSMA5P28066 241 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 CACNA1BQ00975 2339 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 MXD4Q14582 209 aaPredicted RBP6.8□□□□□ -1.32
VRK3-220ENST00000600259 SLC44A4Q53GD3 710 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 SPECC1Q5M775 1068 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 NOTUMQ6P988 496 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 CD300LGQ6UXG3 332 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 OTUD6AQ7L8S5 288 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 DGLUCYQ7Z3D6 616 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 GRASPQ7Z6J2 395 aaPredicted RBP6.8□□□□□ -1.32
VRK3-220ENST00000600259 NEK8Q86SG6 692 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 GLYCTKQ8IVS8 523 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 TRIM22Q8IYM9 498 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 ZNF687Q8N1G0 1237 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 ZBTB44Q8NCP5 570 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 ITFG1Q8TB96 612 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 KCNG4Q8TDN1 519 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 PIK3R5Q8WYR1 880 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 FGF13Q92913 245 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 TNFRSF25Q93038 417 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 CLDN23Q96B33 292 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 OSBPL6Q9BZF3 934 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 TM6SF1Q9BZW5 370 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 FZD8Q9H461 694 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 ANKEF1Q9NU02 776 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 KLK14Q9P0G3 267 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 FBXW11Q9UKB1 542 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 CDH7Q9ULB5 785 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 ZMYM2Q9UBW7 1377 aa6.8□□□□□ -1.32
VRK3-220ENST00000600259 KANSL1LA0AUZ9 987 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 INO80B-WBP1J3KQ70 363 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 WNT7AO00755 349 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 LILRB5O75023 590 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 TADA2AO75478 443 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 ERLIN2O94905 339 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 CTDNEP1O95476 244 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 NPTXRO95502 500 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 POU2F2P09086 479 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 HNRNPA1P09651 372 aaKnown RBP eCLIP6.79□□□□□ -1.32
VRK3-220ENST00000600259 XRCC6P12956 609 aaKnown RBP eCLIP6.79□□□□□ -1.32
VRK3-220ENST00000600259 HOXA9P31269 272 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 RARRES1P49788 294 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 CYP4A11Q02928 519 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 GRIK3Q13003 919 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 SNW1Q13573 536 aaKnown RBP6.79□□□□□ -1.32
VRK3-220ENST00000600259 RAB33AQ14088 237 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 HSP90AA2PQ14568 343 aaPredicted RBP6.79□□□□□ -1.32
VRK3-220ENST00000600259 ZNF528Q3MIS6 628 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 ELMSAN1Q6PJG2 1045 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 RSPO2Q6UXX9 243 aaPredicted RBP6.79□□□□□ -1.32
VRK3-220ENST00000600259 CENPQQ7L2Z9 268 aaPredicted RBP6.79□□□□□ -1.32
VRK3-220ENST00000600259 GET4Q7L5D6 327 aaPredicted RBP6.79□□□□□ -1.32
VRK3-220ENST00000600259 TPH2Q8IWU9 490 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 SPDYE1Q8NFV5 336 aaPredicted RBP6.79□□□□□ -1.32
VRK3-220ENST00000600259 BORCS6Q96GS4 357 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 SHDQ96IW2 340 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 MTRQ99707 1265 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 EIF2AK1Q9BQI3 630 aaKnown RBP6.79□□□□□ -1.32
VRK3-220ENST00000600259 APOL6Q9BWW8 343 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 PLA2G2FQ9BZM2 168 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 SLKQ9H2G2 1235 aaPredicted RBP6.79□□□□□ -1.32
VRK3-220ENST00000600259 PIDD1Q9HB75 910 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 DNMT3BQ9UBC3 853 aaKnown RBP6.79□□□□□ -1.32
VRK3-220ENST00000600259 FBXO4Q9UKT5 387 aa6.79□□□□□ -1.32
VRK3-220ENST00000600259 F5P12259 2224 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 COL4A3Q01955 1670 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 FANCMQ8IYD8 2048 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 CCDC194A0A1B0GVG4 234 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 FAM170BA6NMN3 283 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 NRG2O14511 850 aaPredicted RBP6.78□□□□□ -1.32
VRK3-220ENST00000600259 CCL16O15467 120 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 EPB41L2O43491 1005 aaKnown RBP6.78□□□□□ -1.32
VRK3-220ENST00000600259 CCNT1O60563 726 aaKnown RBP6.78□□□□□ -1.32
VRK3-220ENST00000600259 NR1I2O75469 434 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 DGAT1O75907 488 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 KIF4AO95239 1232 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 EDN1P05305 212 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 SPATA31C1P0DKV0 1188 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 FDPSP14324 419 aaKnown RBP6.78□□□□□ -1.32
VRK3-220ENST00000600259 CD72P21854 359 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 FGFR3P22607 806 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 PRKCQQ04759 706 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 SCRN1Q12765 414 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 NR5A1Q13285 461 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms