RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 BRSK2Q8IWQ3 736 aa16.79■□□□□ 0.28
UPF1-206ENST00000598471 THNSL1Q8IYQ7 743 aa16.79■□□□□ 0.28
UPF1-206ENST00000598471 ZSWIM2Q8NEG5 633 aa16.79■□□□□ 0.28
UPF1-206ENST00000598471 PCMTD1Q96MG8 357 aaPredicted RBP16.79■□□□□ 0.28
UPF1-206ENST00000598471 PPP1R9BQ96SB3 815 aa16.79■□□□□ 0.28
UPF1-206ENST00000598471 TRIM6Q9C030 488 aaPredicted RBP16.79■□□□□ 0.28
UPF1-206ENST00000598471 CHST12Q9NRB3 414 aa16.79■□□□□ 0.28
UPF1-206ENST00000598471 ITIH6Q6UXX5 1313 aa16.78■□□□□ 0.28
UPF1-206ENST00000598471 TULP1O00294 542 aaPredicted RBP16.78■□□□□ 0.28
UPF1-206ENST00000598471 PITPNM1O00562 1244 aa16.78■□□□□ 0.28
UPF1-206ENST00000598471 IL18RAPO95256 599 aa16.78■□□□□ 0.28
UPF1-206ENST00000598471 NPTXRO95502 500 aa16.78■□□□□ 0.28
UPF1-206ENST00000598471 PTMAP06454 111 aaKnown RBP16.78■□□□□ 0.28
UPF1-206ENST00000598471 TPM1P09493 284 aa16.78■□□□□ 0.28
UPF1-206ENST00000598471 GHRP10912 638 aa16.78■□□□□ 0.28
UPF1-206ENST00000598471 HOXA11P31270 313 aaPredicted RBP16.78■□□□□ 0.28
UPF1-206ENST00000598471 DEKP35659 375 aaKnown RBP16.78■□□□□ 0.28
UPF1-206ENST00000598471 CETN1Q12798 172 aa16.78■□□□□ 0.28
UPF1-206ENST00000598471 NFX1Q12986 1120 aaKnown RBP16.78■□□□□ 0.28
UPF1-206ENST00000598471 LRRC8DQ7L1W4 858 aa16.78■□□□□ 0.28
UPF1-206ENST00000598471 PARD3BQ8TEW8 1205 aa16.78■□□□□ 0.28
UPF1-206ENST00000598471 CCDC127Q96BQ5 260 aa16.78■□□□□ 0.28
UPF1-206ENST00000598471 ERGIC2Q96RQ1 377 aa16.78■□□□□ 0.28
UPF1-206ENST00000598471 CCDC94Q9BW85 323 aaPredicted RBP16.78■□□□□ 0.28
UPF1-206ENST00000598471 RPF1Q9H9Y2 349 aaKnown RBP16.78■□□□□ 0.28
UPF1-206ENST00000598471 IMPACTQ9P2X3 320 aa16.78■□□□□ 0.28
UPF1-206ENST00000598471 CPSF3Q9UKF6 684 aaKnown RBP16.78■□□□□ 0.28
UPF1-206ENST00000598471 ST3GAL5Q9UNP4 418 aa16.78■□□□□ 0.28
UPF1-206ENST00000598471 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.78■□□□□ 0.287e-8■■□□□ 12.6
UPF1-206ENST00000598471 BRCA2P51587 3418 aa16.78■□□□□ 0.28
UPF1-206ENST00000598471 P4HA2O15460 535 aa16.77■□□□□ 0.28
UPF1-206ENST00000598471 FAM189A1O60320 539 aa16.77■□□□□ 0.28
UPF1-206ENST00000598471 TRIM49P0CI25 452 aa16.77■□□□□ 0.28
UPF1-206ENST00000598471 TRIM49CP0CI26 452 aa16.77■□□□□ 0.28
UPF1-206ENST00000598471 ZSCAN20P17040 1043 aaPredicted RBP16.77■□□□□ 0.28
UPF1-206ENST00000598471 GTF2H1P32780 548 aa16.77■□□□□ 0.28
UPF1-206ENST00000598471 GRM5P41594 1212 aa16.77■□□□□ 0.28
UPF1-206ENST00000598471 MCCD1P59942 119 aaPredicted RBP16.77■□□□□ 0.28
UPF1-206ENST00000598471 MYL7Q01449 175 aa16.77■□□□□ 0.28
UPF1-206ENST00000598471 TRIM14Q14142 442 aa16.77■□□□□ 0.28
UPF1-206ENST00000598471 LPIN1Q14693 890 aa16.77■□□□□ 0.28
UPF1-206ENST00000598471 TRIM60Q495X7 471 aa16.77■□□□□ 0.28
UPF1-206ENST00000598471 TWF2Q6IBS0 349 aaKnown RBP16.77■□□□□ 0.28
UPF1-206ENST00000598471 CRELD2Q6UXH1 353 aaPredicted RBP16.77■□□□□ 0.28
UPF1-206ENST00000598471 FAM43BQ6ZT52 329 aaPredicted RBP16.77■□□□□ 0.28
UPF1-206ENST00000598471 HACE1Q8IYU2 909 aa16.77■□□□□ 0.28
UPF1-206ENST00000598471 SPC24Q8NBT2 197 aa16.77■□□□□ 0.28
UPF1-206ENST00000598471 IQCDQ96DY2 449 aa16.77■□□□□ 0.28
UPF1-206ENST00000598471 ERVK-5Q9HDB9 667 aa16.77■□□□□ 0.28
UPF1-206ENST00000598471 GTPBP10A4D1E9 387 aaKnown RBP16.76■□□□□ 0.27
UPF1-206ENST00000598471 PARNO95453 639 aaKnown RBP16.76■□□□□ 0.27
UPF1-206ENST00000598471 STAG3L1P0CL83 205 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 DLATP10515 647 aaKnown RBP16.76■□□□□ 0.27
UPF1-206ENST00000598471 CD52P31358 61 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 PBX1P40424 430 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 FMO5P49326 533 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 MXI1P50539 228 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 AP3M2P53677 418 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 YARSP54577 528 aaKnown RBP16.76■□□□□ 0.27
UPF1-206ENST00000598471 OSTNP61366 133 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 TLE2Q04725 743 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 SYCP1Q15431 976 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 ZBTB41Q5SVQ8 909 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 GBP6Q6ZN66 633 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 PPFIBP1Q86W92 1011 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 ACAP3Q96P50 834 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 CGRRF1Q99675 332 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 NUP58Q9BVL2 599 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 MMRN2Q9H8L6 949 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 PADI3Q9ULW8 664 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 ATP11BQ9Y2G3 1177 aa16.76■□□□□ 0.27
UPF1-206ENST00000598471 LRRIQ3A6PVS8 624 aaPredicted RBP16.75■□□□□ 0.27
UPF1-206ENST00000598471 TNNI1P19237 187 aa16.75■□□□□ 0.27
UPF1-206ENST00000598471 TNFSF9P41273 254 aa16.75■□□□□ 0.27
UPF1-206ENST00000598471 GSDMDP57764 484 aa16.75■□□□□ 0.27
UPF1-206ENST00000598471 EXOC3L4Q17RC7 722 aa16.75■□□□□ 0.27
UPF1-206ENST00000598471 SEZ6Q53EL9 994 aa16.75■□□□□ 0.27
UPF1-206ENST00000598471 TRAF7Q6Q0C0 670 aa16.75■□□□□ 0.27
UPF1-206ENST00000598471 CD302Q8IX05 232 aa16.75■□□□□ 0.27
UPF1-206ENST00000598471 CEP120Q8N960 986 aa16.75■□□□□ 0.27
UPF1-206ENST00000598471 FAM212AQ96EL1 285 aa16.75■□□□□ 0.27
UPF1-206ENST00000598471 HIPK3Q9H422 1215 aa16.75■□□□□ 0.27
UPF1-206ENST00000598471 TMEM8AQ9HCN3 771 aa16.75■□□□□ 0.27
UPF1-206ENST00000598471 PDE11AQ9HCR9 933 aa16.75■□□□□ 0.27
UPF1-206ENST00000598471 TOPORSQ9NS56 1045 aaPredicted RBP16.75■□□□□ 0.27
UPF1-206ENST00000598471 PMM2O15305 246 aa16.74■□□□□ 0.27
UPF1-206ENST00000598471 SKIP12755 728 aa16.74■□□□□ 0.27
UPF1-206ENST00000598471 GCLMP48507 274 aa16.74■□□□□ 0.27
UPF1-206ENST00000598471 RAB27AP51159 221 aa16.74■□□□□ 0.27
UPF1-206ENST00000598471 DLG4P78352 724 aa16.74■□□□□ 0.27
UPF1-206ENST00000598471 ENOX2Q16206 610 aaKnown RBP16.74■□□□□ 0.27
UPF1-206ENST00000598471 KRT39Q6A163 491 aa16.74■□□□□ 0.27
UPF1-206ENST00000598471 WDR49Q8IV35 697 aa16.74■□□□□ 0.27
UPF1-206ENST00000598471 NEK11Q8NG66 645 aa16.74■□□□□ 0.27
UPF1-206ENST00000598471 PLEKHO2Q8TD55 490 aa16.74■□□□□ 0.27
UPF1-206ENST00000598471 EIF2AQ9BY44 585 aaKnown RBP16.74■□□□□ 0.27
UPF1-206ENST00000598471 ASB7Q9H672 318 aa16.74■□□□□ 0.27
UPF1-206ENST00000598471 AGO3Q9H9G7 860 aaKnown RBP16.74■□□□□ 0.27
UPF1-206ENST00000598471 GCNT4Q9P109 453 aa16.74■□□□□ 0.27
UPF1-206ENST00000598471 CLTBP09497 229 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms