RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 RTP2Q5QGT7 225 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 LAIR1Q6GTX8 287 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 TSSK4Q6SA08 328 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 MOXD1Q6UVY6 613 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 PRSS55Q6UWB4 352 aaPredicted RBP11.29□□□□□ -0.6
TRIM28-210ENST00000597618 FERMT3Q86UX7 667 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 ITFG1Q8TB96 612 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 CHAMP1Q96JM3 812 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 KXD1Q9BQD3 176 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 TTPALQ9BTX7 342 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 APOL6Q9BWW8 343 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 RNF26Q9BY78 433 aaPredicted RBP11.29□□□□□ -0.6
TRIM28-210ENST00000597618 CSRNP2Q9H175 543 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 NXF3Q9H4D5 531 aaKnown RBP11.29□□□□□ -0.6
TRIM28-210ENST00000597618 MIOSQ9NXC5 875 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 VPS54Q9P1Q0 977 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 KCNH3Q9ULD8 1083 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 POLIQ9UNA4 740 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 COL4A3Q01955 1670 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 FAM208BQ5VWN6 2430 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 MYH15Q9Y2K3 1946 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 ECI2O75521 394 aa11.28□□□□□ -0.6
TRIM28-210ENST00000597618 NLRP5P59047 1200 aa11.28□□□□□ -0.6
TRIM28-210ENST00000597618 PTENP60484 403 aa11.28□□□□□ -0.6
TRIM28-210ENST00000597618 ADCY1Q08828 1119 aa11.28□□□□□ -0.6
TRIM28-210ENST00000597618 MTAPQ13126 283 aa11.28□□□□□ -0.6
TRIM28-210ENST00000597618 HSP90AA2PQ14568 343 aaPredicted RBP11.28□□□□□ -0.6
TRIM28-210ENST00000597618 MXD4Q14582 209 aaPredicted RBP11.28□□□□□ -0.6
TRIM28-210ENST00000597618 PSMD5Q16401 504 aa11.28□□□□□ -0.6
TRIM28-210ENST00000597618 ADCK5Q3MIX3 580 aa11.28□□□□□ -0.6
TRIM28-210ENST00000597618 PABPC1LQ4VXU2 614 aaKnown RBP11.28□□□□□ -0.6
TRIM28-210ENST00000597618 PDXDC1Q6P996 788 aa11.28□□□□□ -0.6
TRIM28-210ENST00000597618 NPAS3Q8IXF0 933 aa11.28□□□□□ -0.6
TRIM28-210ENST00000597618 CELF5Q8N6W0 485 aaKnown RBP11.28□□□□□ -0.6
TRIM28-210ENST00000597618 PIK3R5Q8WYR1 880 aa11.28□□□□□ -0.6
TRIM28-210ENST00000597618 CPB2Q96IY4 423 aa11.28□□□□□ -0.6
TRIM28-210ENST00000597618 IER2Q9BTL4 223 aa11.28□□□□□ -0.6
TRIM28-210ENST00000597618 SH3GLB2Q9NR46 395 aa11.28□□□□□ -0.6
TRIM28-210ENST00000597618 BMP2KQ9NSY1 1161 aaPredicted RBP11.28□□□□□ -0.6
TRIM28-210ENST00000597618 BAHCC1Q9P281 2608 aa11.28□□□□□ -0.6
TRIM28-210ENST00000597618 MTCL1Q9Y4B5 1905 aaKnown RBP11.27□□□□□ -0.6
TRIM28-210ENST00000597618 INO80B-WBP1J3KQ70 363 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 EML1O00423 815 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 P4HBP07237 508 aaKnown RBP11.27□□□□□ -0.61
TRIM28-210ENST00000597618 RETP07949 1114 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 AKAP5P24588 427 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 YWHABP31946 246 aaKnown RBP11.27□□□□□ -0.61
TRIM28-210ENST00000597618 SPEM2Q0P670 501 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 PPP2R5CQ13362 524 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 TFDP1Q14186 410 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 UVSSAQ2YD98 709 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 MAMSTRQ6ZN01 415 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 RTL10Q7L3V2 364 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 OTUD6AQ7L8S5 288 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 RASEFQ8IZ41 740 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 ZNF579Q8NAF0 562 aaKnown RBP11.27□□□□□ -0.61
TRIM28-210ENST00000597618 GSTCDQ8NEC7 633 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 SLC7A14Q8TBB6 771 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 DNASE1L2Q92874 299 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 MTRQ99707 1265 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 CLSTN3Q9BQT9 956 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 SLC26A6Q9BXS9 759 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 CHRDQ9H2X0 955 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 GDE1Q9NZC3 331 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 DDX25Q9UHL0 483 aaKnown RBP11.27□□□□□ -0.61
TRIM28-210ENST00000597618 VAV3Q9UKW4 847 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 PCDHA4Q9UN74 947 aa11.27□□□□□ -0.61
TRIM28-210ENST00000597618 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.27□□□□□ -0.61
TRIM28-210ENST00000597618 CNOT1A5YKK6 2376 aaKnown RBP11.26□□□□□ -0.61
TRIM28-210ENST00000597618 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.26□□□□□ -0.61
TRIM28-210ENST00000597618 MAN2B1O00754 1011 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 FOXD2O60548 495 aaPredicted RBP11.26□□□□□ -0.61
TRIM28-210ENST00000597618 TDGF1P13385 188 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 ARF4P18085 180 aaPredicted RBP11.26□□□□□ -0.61
TRIM28-210ENST00000597618 CCR3P51677 355 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 MBTD1Q05BQ5 628 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 POU5F1BQ06416 359 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 DMWDQ09019 674 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 ELAVL2Q12926 359 aaKnown RBP11.26□□□□□ -0.61
TRIM28-210ENST00000597618 TUSC3Q13454 348 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 FZD5Q13467 585 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 LPAL2Q16609 132 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 AXDND1Q5T1B0 1012 aaPredicted RBP11.26□□□□□ -0.61
TRIM28-210ENST00000597618 FAM171A1Q5VUB5 890 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 SLC27A1Q6PCB7 646 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 Q6ZUG5 572 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 CEP57Q86XR8 500 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 IFNLR1Q8IU57 520 aaPredicted RBP11.26□□□□□ -0.61
TRIM28-210ENST00000597618 C4orf19Q8IY42 314 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 LNX1Q8TBB1 728 aaPredicted RBP11.26□□□□□ -0.61
TRIM28-210ENST00000597618 ING5Q8WYH8 240 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 DDX1Q92499 740 aaKnown RBP11.26□□□□□ -0.61
TRIM28-210ENST00000597618 RABGGTAQ92696 567 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 BRF1Q92994 677 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 FAM20AQ96MK3 541 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 LXNQ9BS40 222 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 SLKQ9H2G2 1235 aaPredicted RBP11.26□□□□□ -0.61
TRIM28-210ENST00000597618 HEBP1Q9NRV9 189 aa11.26□□□□□ -0.61
TRIM28-210ENST00000597618 WRAP73Q9P2S5 460 aaPredicted RBP11.26□□□□□ -0.61
TRIM28-210ENST00000597618 MRPS23Q9Y3D9 190 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms