RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 NPTXRO95502 500 aa15.93■□□□□ 0.14
VRK3-212ENST00000596814 SELPP16109 830 aa15.93■□□□□ 0.14
VRK3-212ENST00000596814 TNFSF9P41273 254 aa15.93■□□□□ 0.14
VRK3-212ENST00000596814 TLE2Q04725 743 aa15.93■□□□□ 0.14
VRK3-212ENST00000596814 NFX1Q12986 1120 aaKnown RBP15.93■□□□□ 0.14
VRK3-212ENST00000596814 PSMD6Q15008 389 aa15.93■□□□□ 0.14
VRK3-212ENST00000596814 KYAT1Q16773 422 aa15.93■□□□□ 0.14
VRK3-212ENST00000596814 PTPN21Q16825 1174 aa15.93■□□□□ 0.14
VRK3-212ENST00000596814 VSTM4Q8IW00 320 aa15.93■□□□□ 0.14
VRK3-212ENST00000596814 TMC2Q8TDI7 906 aa15.93■□□□□ 0.14
VRK3-212ENST00000596814 CCDC127Q96BQ5 260 aa15.93■□□□□ 0.14
VRK3-212ENST00000596814 AGO3Q9H9G7 860 aaKnown RBP15.93■□□□□ 0.14
VRK3-212ENST00000596814 ERVK-5Q9HDB9 667 aa15.93■□□□□ 0.14
VRK3-212ENST00000596814 ATP11BQ9Y2G3 1177 aa15.93■□□□□ 0.14
VRK3-212ENST00000596814 ANK1P16157 1881 aa15.92■□□□□ 0.14
VRK3-212ENST00000596814 RALGAPA2Q2PPJ7 1873 aa15.92■□□□□ 0.14
VRK3-212ENST00000596814 A0A1W2PQC6 194 aa15.92■□□□□ 0.14
VRK3-212ENST00000596814 TULP1O00294 542 aaPredicted RBP15.92■□□□□ 0.14
VRK3-212ENST00000596814 CD52P31358 61 aa15.92■□□□□ 0.14
VRK3-212ENST00000596814 PBX1P40424 430 aa15.92■□□□□ 0.14
VRK3-212ENST00000596814 OSTNP61366 133 aa15.92■□□□□ 0.14
VRK3-212ENST00000596814 DLG4P78352 724 aa15.92■□□□□ 0.14
VRK3-212ENST00000596814 TMC6Q7Z403 805 aa15.92■□□□□ 0.14
VRK3-212ENST00000596814 SPC24Q8NBT2 197 aa15.92■□□□□ 0.14
VRK3-212ENST00000596814 PARD3BQ8TEW8 1205 aa15.92■□□□□ 0.14
VRK3-212ENST00000596814 EIF2AQ9BY44 585 aaKnown RBP15.92■□□□□ 0.14
VRK3-212ENST00000596814 TRIM6Q9C030 488 aaPredicted RBP15.92■□□□□ 0.14
VRK3-212ENST00000596814 PADI3Q9ULW8 664 aa15.92■□□□□ 0.14
VRK3-212ENST00000596814 CITO14578 2027 aa15.92■□□□□ 0.14
VRK3-212ENST00000596814 LRRIQ3A6PVS8 624 aaPredicted RBP15.91■□□□□ 0.14
VRK3-212ENST00000596814 CLTAP09496 248 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 STAG3L1P0CL83 205 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 DLATP10515 647 aaKnown RBP15.91■□□□□ 0.14
VRK3-212ENST00000596814 MCCD1P59942 119 aaPredicted RBP15.91■□□□□ 0.14
VRK3-212ENST00000596814 FAAP100Q0VG06 881 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 C1orf220Q5T0J3 134 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 SPECC1LQ69YQ0 1117 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 TWF2Q6IBS0 349 aaKnown RBP15.91■□□□□ 0.14
VRK3-212ENST00000596814 ERGIC2Q96RQ1 377 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 FNBP1Q96RU3 617 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 PPP1R9BQ96SB3 815 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 OSBPL7Q9BZF2 842 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 MMRN2Q9H8L6 949 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 RPF1Q9H9Y2 349 aaKnown RBP15.91■□□□□ 0.14
VRK3-212ENST00000596814 CHST12Q9NRB3 414 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 STX10O60499 249 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 N4BP1O75113 896 aaKnown RBP15.91■□□□□ 0.14
VRK3-212ENST00000596814 DEKP35659 375 aaKnown RBP15.91■□□□□ 0.14
VRK3-212ENST00000596814 GRM5P41594 1212 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 FMO5P49326 533 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 MBTPS1Q14703 1052 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 SYCP1Q15431 976 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 ENOX2Q16206 610 aaKnown RBP15.91■□□□□ 0.14
VRK3-212ENST00000596814 LRRC26Q2I0M4 334 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 TMEM192Q8IY95 271 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 CCDC94Q9BW85 323 aaPredicted RBP15.91■□□□□ 0.14
VRK3-212ENST00000596814 HIPK3Q9H422 1215 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 PDE11AQ9HCR9 933 aa15.91■□□□□ 0.14
VRK3-212ENST00000596814 ITIH6Q6UXX5 1313 aa15.9■□□□□ 0.14
VRK3-212ENST00000596814 CXCL8P10145 99 aa15.9■□□□□ 0.14
VRK3-212ENST00000596814 ZSCAN20P17040 1043 aaPredicted RBP15.9■□□□□ 0.14
VRK3-212ENST00000596814 WNT7BP56706 349 aa15.9■□□□□ 0.14
VRK3-212ENST00000596814 MYL7Q01449 175 aa15.9■□□□□ 0.14
VRK3-212ENST00000596814 POU5F1Q01860 360 aaKnown RBP15.9■□□□□ 0.14
VRK3-212ENST00000596814 PPP3CAQ08209 521 aa15.9■□□□□ 0.14
VRK3-212ENST00000596814 SURF1Q15526 300 aa15.9■□□□□ 0.14
VRK3-212ENST00000596814 CBWD6Q4V339 395 aa15.9■□□□□ 0.14
VRK3-212ENST00000596814 CBWD3Q5JTY5 395 aa15.9■□□□□ 0.14
VRK3-212ENST00000596814 CBWD5Q5RIA9 395 aa15.9■□□□□ 0.14
VRK3-212ENST00000596814 UBXN11Q5T124 520 aa15.9■□□□□ 0.14
VRK3-212ENST00000596814 ACAP3Q96P50 834 aa15.9■□□□□ 0.14
VRK3-212ENST00000596814 CGRRF1Q99675 332 aa15.9■□□□□ 0.14
VRK3-212ENST00000596814 GTPBP10A4D1E9 387 aaKnown RBP15.89■□□□□ 0.13
VRK3-212ENST00000596814 GOLGA6L6A8MZA4 724 aa15.89■□□□□ 0.13
VRK3-212ENST00000596814 RBAK-RBAKDNI3L0D1 243 aa15.89■□□□□ 0.13
VRK3-212ENST00000596814 IL18RAPO95256 599 aa15.89■□□□□ 0.13
VRK3-212ENST00000596814 GTF2H1P32780 548 aa15.89■□□□□ 0.13
VRK3-212ENST00000596814 GCLMP48507 274 aa15.89■□□□□ 0.13
VRK3-212ENST00000596814 MXI1P50539 228 aa15.89■□□□□ 0.13
VRK3-212ENST00000596814 FAM212AQ96EL1 285 aa15.89■□□□□ 0.13
VRK3-212ENST00000596814 PCMTD1Q96MG8 357 aaPredicted RBP15.89■□□□□ 0.13
VRK3-212ENST00000596814 POP1Q99575 1024 aaKnown RBP15.89■□□□□ 0.13
VRK3-212ENST00000596814 IFIH1Q9BYX4 1025 aaKnown RBP15.89■□□□□ 0.13
VRK3-212ENST00000596814 NXF3Q9H4D5 531 aaKnown RBP15.89■□□□□ 0.13
VRK3-212ENST00000596814 TOPORSQ9NS56 1045 aaPredicted RBP15.89■□□□□ 0.13
VRK3-212ENST00000596814 TBX21Q9UL17 535 aa15.89■□□□□ 0.13
VRK3-212ENST00000596814 UMODL1Q5DID0 1318 aa15.89■□□□□ 0.13
VRK3-212ENST00000596814 P4HA2O15460 535 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 CLTBP09497 229 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 TNNI1P19237 187 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 EN2P19622 333 aaPredicted RBP15.88■□□□□ 0.13
VRK3-212ENST00000596814 CLDN10P78369 228 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 CRACR2AQ9BSW2 395 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 PPP1R12CQ9BZL4 782 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 TMX1Q9H3N1 280 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 TMEM8AQ9HCN3 771 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 SNTG2Q9NY99 539 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 GCNT4Q9P109 453 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 IMPACTQ9P2X3 320 aa15.88■□□□□ 0.13
VRK3-212ENST00000596814 SIK3Q9Y2K2 1263 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms