RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SPIRE2Q8WWL2 714 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 IFT81Q8WYA0 676 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 IL17RAQ96F46 866 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 MTMR9Q96QG7 549 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 NGRNQ9NPE2 291 aaKnown RBP10.52□□□□□ -0.73
LIG3-216ENST00000593099 UBN1Q9NPG3 1134 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 GOLGA6AQ9NYA3 693 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 USP54Q70EL1 1684 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 NDC80O14777 642 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 PEX10O60683 326 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 B3GAT3O94766 335 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 IFNB1P01574 187 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 GBP1P32455 592 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 CTCFP49711 727 aaPredicted RBP10.52□□□□□ -0.73
LIG3-216ENST00000593099 TRIM72Q6ZMU5 477 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 EDEM3Q9BZQ6 932 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 TMEM8AQ9HCN3 771 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 HYOU1Q9Y4L1 999 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 HLA-DRAP01903 254 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 SMIM10L2AP0DMW4 78 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 SMIM10L2BP0DMW5 78 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 AXLP30530 894 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 RRP1BQ14684 758 aaKnown RBP10.51□□□□□ -0.73
LIG3-216ENST00000593099 PAN2Q504Q3 1202 aaKnown RBP10.51□□□□□ -0.73
LIG3-216ENST00000593099 SAPCD2Q86UD0 394 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 ENGASEQ8NFI3 743 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 DONSONQ9NYP3 566 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 STAP1Q9ULZ2 295 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 DAAM1Q9Y4D1 1078 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 SEPT4O43236 478 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 PPP1R11O60927 126 aaPredicted RBP10.51□□□□□ -0.73
LIG3-216ENST00000593099 ATP9AO75110 1047 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 MAPTP10636 758 aaKnown RBP10.51□□□□□ -0.73
LIG3-216ENST00000593099 ZNF18P17022 549 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 PPP2R5EQ16537 467 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 ZNF720Q7Z2F6 126 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 TRIM62Q9BVG3 475 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 NHEJ1Q9H9Q4 299 aaPredicted RBP10.51□□□□□ -0.73
LIG3-216ENST00000593099 KANSL3Q9P2N6 904 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 SRRDQ9UH36 339 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 PRRG1O14668 218 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 PLCB4Q15147 1175 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 PTPROQ16827 1216 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 SARM1Q6SZW1 724 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 PHLDB2Q86SQ0 1253 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 PASD1Q8IV76 773 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 PANX2Q96RD6 677 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 IQCGQ9H095 443 aaKnown RBP10.51□□□□□ -0.73
LIG3-216ENST00000593099 OLFML3Q9NRN5 406 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 EHD2Q9NZN4 543 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 HPSEQ9Y251 543 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 C5P01031 1676 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 P4HA2O15460 535 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 HSF2BPO75031 334 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 AMHP03971 560 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 INHAP05111 366 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 THP07101 528 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 SLC10A3P09131 477 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 TCP1P17987 556 aaKnown RBP10.51□□□□□ -0.73
LIG3-216ENST00000593099 SOX10P56693 466 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 ITKQ08881 620 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 GLRA4Q5JXX5 417 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 LDLRAD1Q5T700 205 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 TMEM199Q8N511 208 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 PPTC7Q8NI37 304 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 HPDLQ96IR7 371 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 PNMA5Q96PV4 448 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 UTP11Q9Y3A2 253 aaKnown RBP10.51□□□□□ -0.73
LIG3-216ENST00000593099 SAR1BQ9Y6B6 198 aa10.51□□□□□ -0.73
LIG3-216ENST00000593099 A0A1W2PQC6 194 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 MFAP3LO75121 409 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 CSDE1O75534 798 aaKnown RBP10.5□□□□□ -0.73
LIG3-216ENST00000593099 TMEM119Q4V9L6 283 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 MIPOL1Q8TD10 442 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 CPB2Q96IY4 423 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 ACKR2O00590 384 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 IKBKEQ14164 716 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 RFX6Q8HWS3 928 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 RHOT2Q8IXI1 618 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 KLHL7Q8IXQ5 586 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 DPP3Q9NY33 737 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 SLC8A2Q9UPR5 921 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 FRMPD4Q14CM0 1322 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 TMEM150BA6NC51 233 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 LRRC53A6NM62 1247 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 RHOXF2BP0C7M4 288 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 MCF2P10911 925 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 GRIK1P39086 918 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 NOP14P78316 857 aaKnown RBP10.5□□□□□ -0.73
LIG3-216ENST00000593099 RPAINQ86UA6 219 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 SREK1Q8WXA9 508 aaKnown RBP10.5□□□□□ -0.73
LIG3-216ENST00000593099 CLEC4DQ8WXI8 215 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 HAS1Q92839 578 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 RHOXF2Q9BQY4 288 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 C11orf70Q9BRQ4 267 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 NIF3L1Q9GZT8 377 aa10.5□□□□□ -0.73
LIG3-216ENST00000593099 CNOT8Q9UFF9 292 aaKnown RBP10.5□□□□□ -0.73
LIG3-216ENST00000593099 MAGED2Q9UNF1 606 aaPredicted RBP10.5□□□□□ -0.73
LIG3-216ENST00000593099 A0A1B0GUA9 196 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 H7C0C1 242 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms