RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 CCDC94Q9BW85 323 aaPredicted RBP13.03□□□□□ -0.32
LIG3-213ENST00000590630 GBP3Q9H0R5 595 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 GDPD2Q9HCC8 539 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 TLR9Q9NR96 1032 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 TOPORSQ9NS56 1045 aaPredicted RBP13.03□□□□□ -0.32
LIG3-213ENST00000590630 KLK14Q9P0G3 267 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 ANKFY1Q9P2R3 1169 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 DNAJB4Q9UDY4 337 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 PUF60Q9UHX1 559 aaKnown RBP13.03□□□□□ -0.32
LIG3-213ENST00000590630 GDAQ9Y2T3 454 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 SPTBN5Q9NRC6 3674 aaKnown RBP13.03□□□□□ -0.32
LIG3-213ENST00000590630 VCANP13611 3396 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 ACTN4O43707 911 aaKnown RBP13.02□□□□□ -0.33
LIG3-213ENST00000590630 NR1I2O75469 434 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 DDHD2O94830 711 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 GALTP07902 379 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 DNAJB1P25685 340 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 SYKP43405 635 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 YARSP54577 528 aaKnown RBP13.02□□□□□ -0.33
LIG3-213ENST00000590630 ASIC1P78348 528 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 MCL1Q07820 350 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 COASYQ13057 564 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 CAMK1Q14012 370 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 KYAT1Q16773 422 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 ZC2HC1CQ53FD0 456 aaPredicted RBP13.02□□□□□ -0.33
LIG3-213ENST00000590630 PDE12Q6L8Q7 609 aaKnown RBP13.02□□□□□ -0.33
LIG3-213ENST00000590630 ZBTB33Q86T24 672 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 COLGALT2Q8IYK4 626 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 PPM1EQ8WY54 764 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 TMEM169Q96HH4 297 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 STRA6Q9BX79 667 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 NSUN3Q9H649 340 aaKnown RBP13.02□□□□□ -0.33
LIG3-213ENST00000590630 STK39Q9UEW8 545 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 PCDHB13Q9Y5F0 798 aa13.02□□□□□ -0.33
LIG3-213ENST00000590630 GOLGA6L4A6NEF3 574 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 PTGESO14684 152 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 B4GALT3O60512 393 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 GCNT3O95395 438 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 ALDH2P05091 517 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 MYL1P05976 194 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 THP07101 528 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 MATR3P43243 847 aaKnown RBP eCLIP13.01□□□□□ -0.33
LIG3-213ENST00000590630 SLC11A1P49279 550 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 NDUFA8P51970 172 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 STXBP4Q6ZWJ1 553 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 CEP120Q8N960 986 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 FSIP1Q8NA03 581 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 PPP2R3CQ969Q6 453 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 IGSF21Q96ID5 467 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 ZBTB45Q96K62 511 aaPredicted RBP13.01□□□□□ -0.33
LIG3-213ENST00000590630 ACAP3Q96P50 834 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 MIOSQ9NXC5 875 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 CHMP5Q9NZZ3 219 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 TBC1D7Q9P0N9 293 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 SERTAD1Q9UHV2 236 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 EXOC7Q9UPT5 735 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 FAN1Q9Y2M0 1017 aa13.01□□□□□ -0.33
LIG3-213ENST00000590630 ANK1P16157 1881 aa13□□□□□ -0.33
LIG3-213ENST00000590630 A0A0B4J269 797 aa13□□□□□ -0.33
LIG3-213ENST00000590630 PVALEFA0A1B0GWK0 134 aa13□□□□□ -0.33
LIG3-213ENST00000590630 NT5C1B-RDH14C9J2C7 533 aa13□□□□□ -0.33
LIG3-213ENST00000590630 NRP1O14786 923 aa13□□□□□ -0.33
LIG3-213ENST00000590630 HARSP12081 509 aaKnown RBP13□□□□□ -0.33
LIG3-213ENST00000590630 AFMP43652 599 aa13□□□□□ -0.33
LIG3-213ENST00000590630 CASP5P51878 434 aa13□□□□□ -0.33
LIG3-213ENST00000590630 OSTNP61366 133 aa13□□□□□ -0.33
LIG3-213ENST00000590630 TUSC3Q13454 348 aa13□□□□□ -0.33
LIG3-213ENST00000590630 SKIV2LQ15477 1246 aaKnown RBP13□□□□□ -0.33
LIG3-213ENST00000590630 XKR4Q5GH76 650 aa13□□□□□ -0.33
LIG3-213ENST00000590630 L1TD1Q5T7N2 865 aaKnown RBP13□□□□□ -0.33
LIG3-213ENST00000590630 SLFN12LQ6IEE8 588 aa13□□□□□ -0.33
LIG3-213ENST00000590630 ALKAL1Q6UXT8 129 aa13□□□□□ -0.33
LIG3-213ENST00000590630 UNC13DQ70J99 1090 aa13□□□□□ -0.33
LIG3-213ENST00000590630 DDX53Q86TM3 631 aaKnown RBP13□□□□□ -0.33
LIG3-213ENST00000590630 TMEM173Q86WV6 379 aaPredicted RBP13□□□□□ -0.33
LIG3-213ENST00000590630 PAGE5Q96GU1 130 aa13□□□□□ -0.33
LIG3-213ENST00000590630 ACCSQ96QU6 501 aa13□□□□□ -0.33
LIG3-213ENST00000590630 NGRNQ9NPE2 291 aaKnown RBP13□□□□□ -0.33
LIG3-213ENST00000590630 STYXL1Q9Y6J8 313 aa13□□□□□ -0.33
LIG3-213ENST00000590630 FSCN2O14926 492 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 OGTO15294 1046 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 EIF3DO15371 548 aaKnown RBP eCLIP12.99□□□□□ -0.33
LIG3-213ENST00000590630 NCK2O43639 380 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 FAM189A1O60320 539 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 CLTAP09496 248 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 MYBP10242 640 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 OR1G1P47890 313 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 EHHADHQ08426 723 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 CUL4BQ13620 913 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 BMS1Q14692 1282 aaKnown RBP12.99□□□□□ -0.33
LIG3-213ENST00000590630 POSTNQ15063 836 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 TCEAL5Q5H9L2 206 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 FAM26FQ5R3K3 315 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 SLC39A4Q6P5W5 647 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 MICAL1Q8TDZ2 1067 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 CCDC34Q96HJ3 373 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 SNX27Q96L92 541 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 PPP1R10Q96QC0 940 aaKnown RBP12.99□□□□□ -0.33
LIG3-213ENST00000590630 TCF25Q9BQ70 676 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 MSTO1Q9BUK6 570 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms