RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CEP112Q8N8E3 955 aa4.61□□□□□ -1.67
LIG3-211ENST00000588713 PRPF38AQ8NAV1 312 aaKnown RBP4.61□□□□□ -1.67
LIG3-211ENST00000588713 COLGALT1Q8NBJ5 622 aa4.61□□□□□ -1.67
LIG3-211ENST00000588713 SCFD2Q8WU76 684 aa4.61□□□□□ -1.67
LIG3-211ENST00000588713 FAM227BQ96M60 508 aa4.61□□□□□ -1.67
LIG3-211ENST00000588713 TRERF1Q96PN7 1200 aa4.61□□□□□ -1.67
LIG3-211ENST00000588713 USP28Q96RU2 1077 aa4.61□□□□□ -1.67
LIG3-211ENST00000588713 TACO1Q9BSH4 297 aaKnown RBP4.61□□□□□ -1.67
LIG3-211ENST00000588713 DDX23Q9BUQ8 820 aaKnown RBP4.61□□□□□ -1.67
LIG3-211ENST00000588713 OSBPL6Q9BZF3 934 aa4.61□□□□□ -1.67
LIG3-211ENST00000588713 SFXN1Q9H9B4 322 aa4.61□□□□□ -1.67
LIG3-211ENST00000588713 VIPAS39Q9H9C1 493 aa4.61□□□□□ -1.67
LIG3-211ENST00000588713 SLC38A10Q9HBR0 1119 aa4.61□□□□□ -1.67
LIG3-211ENST00000588713 TFIP11Q9UBB9 837 aaKnown RBP4.61□□□□□ -1.67
LIG3-211ENST00000588713 TUBE1Q9UJT0 475 aa4.61□□□□□ -1.67
LIG3-211ENST00000588713 NDRG2Q9UN36 371 aaKnown RBP4.61□□□□□ -1.67
LIG3-211ENST00000588713 PPP2R2CQ9Y2T4 447 aa4.61□□□□□ -1.67
LIG3-211ENST00000588713 MYH6P13533 1939 aa4.61□□□□□ -1.67
LIG3-211ENST00000588713 UBR5O95071 2799 aaPredicted RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 MYH1P12882 1939 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 MYH8P13535 1937 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 SHROOM3Q8TF72 1996 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 RBM47A0AV96 593 aaKnown RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 C17orf102A2RUQ5 167 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 FAM181BA6NEQ2 426 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 C2orf71A6NGG8 1288 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 H3BQF6 201 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 FANCGO15287 622 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 SIAH2O43255 324 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 SLC3A2P08195 630 aaKnown RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 TOP1P11387 765 aaKnown RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 KRT10P13645 584 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 MCM3P25205 808 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 PBX3P40426 434 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 RPS9P46781 194 aaKnown RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 ME1P48163 572 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 AARSP49588 968 aaKnown RBP eCLIP4.6□□□□□ -1.67
LIG3-211ENST00000588713 CCR3P51677 355 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 PDE4DQ08499 809 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 TBX2Q13207 712 aaPredicted RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 LY6DQ14210 128 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 DGKDQ16760 1214 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 MMS22LQ6ZRQ5 1243 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 Q6ZUG5 572 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 GET4Q7L5D6 327 aaPredicted RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 CCDC91Q7Z6B0 441 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 SRGAP1Q7Z6B7 1085 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 LONP2Q86WA8 852 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 NPAS4Q8IUM7 802 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 ELOA2Q8IYF1 753 aaPredicted RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 LINC00301Q8NCQ3 95 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 LSM14AQ8ND56 463 aaKnown RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 CTCFLQ8NI51 663 aaPredicted RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 LINC01599Q8WXQ3 324 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 STAMQ92783 540 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 ERCC4Q92889 916 aaPredicted RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 CLDN23Q96B33 292 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 DYNLL2Q96FJ2 89 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 XAGE2Q96GT9 111 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 CCDC34Q96HJ3 373 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 FCRL3Q96P31 734 aaPredicted RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 RPP25Q9BUL9 199 aaKnown RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 NAA15Q9BXJ9 866 aaKnown RBP4.6□□□□□ -1.67
LIG3-211ENST00000588713 DEF6Q9H4E7 631 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 SLC32A1Q9H598 525 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 VPS45Q9NRW7 570 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 CYP39A1Q9NYL5 469 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 EPS15L1Q9UBC2 864 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 ADAM21Q9UKJ8 722 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 JRKLQ9Y4A0 524 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 WDR19Q8NEZ3 1342 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 DENND4AQ7Z401 1863 aa4.6□□□□□ -1.67
LIG3-211ENST00000588713 A0A1B0GTL3 188 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 LNP1A1A4G5 178 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 FAM221BA6H8Z2 402 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 EIF3CLB5ME19 914 aaKnown RBP4.59□□□□□ -1.67
LIG3-211ENST00000588713 B8ZZF3 427 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 H0Y626 953 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 TRIM66O15016 1216 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 KIF1CO43896 1103 aaKnown RBP4.59□□□□□ -1.67
LIG3-211ENST00000588713 SORBS3O60504 671 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 CUTAO60888 179 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 SHOX2O60902 331 aaPredicted RBP4.59□□□□□ -1.67
LIG3-211ENST00000588713 PPFIA4O75335 1185 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 TRIM16O95361 564 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 GH1P01241 217 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 CCDC175P0C221 793 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 CCNYL3P0C7X3 344 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 STAG3L1P0CL83 205 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 MYBP10242 640 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 ATP5JP18859 108 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 CMA1P23946 247 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 ITPKBP27987 946 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 CNR2P34972 360 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 NDUFA8P51970 172 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 OAZ1P54368 228 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 GNG11P61952 73 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 SH3BP2P78314 561 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 ARHGAP4P98171 946 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms