RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 ARMC6Q6NXE6 501 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 FBXO42Q6P3S6 717 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 C16orf86Q6ZW13 317 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 LYSMD2Q8IV50 215 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 NIM1KQ8IY84 436 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 ASB10Q8WXI3 467 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 NELL1Q92832 810 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 PAWRQ96IZ0 340 aaKnown RBP4.68□□□□□ -1.66
VPS4B-203ENST00000588323 ADAM2Q99965 735 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 PRDM13Q9H4Q3 707 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 MAP3K2Q9Y2U5 619 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 CDY2AQ9Y6F7 541 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 FKBP9O95302 570 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 ESRRBO95718 433 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 ITGAMP11215 1152 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 CTSSP25774 331 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 PLA2G5P39877 138 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 ADCYAP1R1P41586 468 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 ATXN1P54253 815 aaKnown RBP4.67□□□□□ -1.66
VPS4B-203ENST00000588323 MPP3Q13368 585 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 SEPT7Q16181 437 aaKnown RBP4.67□□□□□ -1.66
VPS4B-203ENST00000588323 TKFCQ3LXA3 575 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 CCDC144BQ3MJ40 725 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 MFSD14BQ5SR56 506 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 PRAMEF14Q5SWL7 426 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 BROXQ5VW32 411 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 FKBP9P1Q75LS8 142 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 SLC41A1Q8IVJ1 513 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 DHX37Q8IY37 1157 aaKnown RBP4.67□□□□□ -1.66
VPS4B-203ENST00000588323 ZNF480Q8WV37 535 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 CEP95Q96GE4 821 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 PHACTR3Q96KR7 559 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 ATP11BQ9Y2G3 1177 aa4.67□□□□□ -1.66
VPS4B-203ENST00000588323 NOC2LQ9Y3T9 749 aaKnown RBP4.67□□□□□ -1.66
VPS4B-203ENST00000588323 MARCH11A6NNE9 402 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 CDKL5O76039 1030 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 FOSP01100 380 aaPredicted RBP4.66□□□□□ -1.66
VPS4B-203ENST00000588323 LPLP06858 475 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 EGR2P11161 476 aaPredicted RBP4.66□□□□□ -1.66
VPS4B-203ENST00000588323 CDK4P11802 303 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 CANXP27824 592 aaKnown RBP4.66□□□□□ -1.66
VPS4B-203ENST00000588323 CRHR1P34998 444 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 FLT3LGP49771 235 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 CHN2P52757 468 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 ELLP55199 621 aaPredicted RBP4.66□□□□□ -1.66
VPS4B-203ENST00000588323 LGALS4P56470 323 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 SPDYE7PQ495Y7 208 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 PITRM1Q5JRX3 1037 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 SLC44A3Q8N4M1 653 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 BOLLQ8N9W6 283 aaKnown RBP4.66□□□□□ -1.66
VPS4B-203ENST00000588323 SIMC1Q8NDZ2 872 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 CAGE1Q8TC20 777 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 SLC9A6Q92581 669 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 RNPC3Q96LT9 517 aaKnown RBP4.66□□□□□ -1.66
VPS4B-203ENST00000588323 TARS2Q9BW92 718 aaKnown RBP4.66□□□□□ -1.66
VPS4B-203ENST00000588323 KCTD10Q9H3F6 313 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 PRDM12Q9H4Q4 367 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 WDR26Q9H7D7 661 aa4.66□□□□□ -1.66
VPS4B-203ENST00000588323 DRGXA6NNA5 263 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 PJA2O43164 708 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 CFIP05156 583 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 FDXRP22570 491 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 PTH2RP49190 550 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 CLRN1P58418 232 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 CT83Q5H943 113 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 FAM47AQ5JRC9 791 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 ATXN7L2Q5T6C5 722 aaPredicted RBP4.65□□□□□ -1.67
VPS4B-203ENST00000588323 AGAP9Q5VTM2 703 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 METRNLQ641Q3 311 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 RASSF3Q86WH2 238 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 APPBP2Q92624 585 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 SLC5A5Q92911 643 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 NAF1Q96HR8 494 aaKnown RBP4.65□□□□□ -1.67
VPS4B-203ENST00000588323 NEU1Q99519 415 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 SPATA5L1Q9BVQ7 753 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 EMC7Q9NPA0 242 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 FANCLQ9NW38 375 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 TESQ9UGI8 421 aaKnown RBP4.65□□□□□ -1.67
VPS4B-203ENST00000588323 TLK1Q9UKI8 766 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 NOX1Q9Y5S8 564 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 RPTORQ8N122 1335 aa4.65□□□□□ -1.67
VPS4B-203ENST00000588323 PHF2O75151 1096 aa4.64□□□□□ -1.67
VPS4B-203ENST00000588323 C1RP00736 705 aa4.64□□□□□ -1.67
VPS4B-203ENST00000588323 PTPN7P35236 360 aa4.64□□□□□ -1.67
VPS4B-203ENST00000588323 MPLP40238 635 aa4.64□□□□□ -1.67
VPS4B-203ENST00000588323 OR56A1Q8NGH5 318 aa4.64□□□□□ -1.67
VPS4B-203ENST00000588323 SLC35B2Q8TB61 432 aa4.64□□□□□ -1.67
VPS4B-203ENST00000588323 USP35Q9P2H5 1018 aa4.64□□□□□ -1.67
VPS4B-203ENST00000588323 PLAAQ9Y263 795 aa4.64□□□□□ -1.67
VPS4B-203ENST00000588323 SNRPA1P09661 255 aaKnown RBP4.63□□□□□ -1.67
VPS4B-203ENST00000588323 RAP2BP61225 183 aa4.63□□□□□ -1.67
VPS4B-203ENST00000588323 UGT8Q16880 541 aa4.63□□□□□ -1.67
VPS4B-203ENST00000588323 ATP13A4Q4VNC1 1196 aa4.63□□□□□ -1.67
VPS4B-203ENST00000588323 HDGFL2Q7Z4V5 671 aaPredicted RBP4.63□□□□□ -1.67
VPS4B-203ENST00000588323 MAPKAPK5Q8IW41 473 aa4.63□□□□□ -1.67
VPS4B-203ENST00000588323 RHOT2Q8IXI1 618 aa4.63□□□□□ -1.67
VPS4B-203ENST00000588323 EAF2Q96CJ1 260 aaPredicted RBP4.63□□□□□ -1.67
VPS4B-203ENST00000588323 MFSD3Q96ES6 412 aa4.63□□□□□ -1.67
VPS4B-203ENST00000588323 DUSP26Q9BV47 211 aa4.63□□□□□ -1.67
VPS4B-203ENST00000588323 ALOXE3Q9BYJ1 711 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms