RNA–Protein interactions for RNA: ENST00000585799.5

SMARCA4-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 3,842 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-208ENST00000585799 ITGA4P13612 1032 aa13.36□□□□□ -0.27
SMARCA4-208ENST00000585799 TFDP1Q14186 410 aa13.36□□□□□ -0.27
SMARCA4-208ENST00000585799 BMT2Q1RMZ1 405 aa13.36□□□□□ -0.27
SMARCA4-208ENST00000585799 RHOT2Q8IXI1 618 aa13.36□□□□□ -0.27
SMARCA4-208ENST00000585799 PARD3BQ8TEW8 1205 aa13.36□□□□□ -0.27
SMARCA4-208ENST00000585799 HAUS1Q96CS2 278 aa13.36□□□□□ -0.27
SMARCA4-208ENST00000585799 INPP4AQ96PE3 977 aaPredicted RBP13.36□□□□□ -0.27
SMARCA4-208ENST00000585799 MAP3K20Q9NYL2 800 aaKnown RBP13.36□□□□□ -0.27
SMARCA4-208ENST00000585799 RNF14Q9UBS8 474 aa13.36□□□□□ -0.27
SMARCA4-208ENST00000585799 AGTPBP1Q9UPW5 1226 aa13.36□□□□□ -0.27
SMARCA4-208ENST00000585799 SMCHD1A6NHR9 2005 aa13.36□□□□□ -0.27
SMARCA4-208ENST00000585799 LNX1Q8TBB1 728 aaPredicted RBP13.36□□□□□ -0.27
SMARCA4-208ENST00000585799 ASAP3Q8TDY4 903 aa13.36□□□□□ -0.27
SMARCA4-208ENST00000585799 MTRF1LQ9UGC7 380 aaKnown RBP13.36□□□□□ -0.27
SMARCA4-208ENST00000585799 CCL15-CCL14A0A0B4J2E2 113 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 H3BQF6 201 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 PIK3R2O00459 728 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 MYBL2P10244 700 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 GNA15P30679 374 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 DHX9Q08211 1270 aaKnown RBP13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 CCL15Q16663 113 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 ZNF365Q70YC5 407 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 FASTKD5Q7L8L6 764 aaKnown RBP13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 RNF169Q8NCN4 708 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 MSANTD4Q8NCY6 345 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.35□□□□□ -0.278e-9■■□□□ 13.9
SMARCA4-208ENST00000585799 L1RE1Q9UN81 338 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 KCNJ1P48048 391 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 FAM71BQ8TC56 605 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 LRRC45Q96CN5 670 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 TIPINQ9BVW5 301 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 MRPL4Q9BYD3 311 aaKnown RBP13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 RPF1Q9H9Y2 349 aaKnown RBP13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 PFASO15067 1338 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 COMTP21964 271 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 FECHP22830 423 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 BPIFB4P59827 614 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 DYNLT1P63172 113 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 CYP24A1Q07973 514 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 NCOA4Q13772 614 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 EFCAB12Q6NXP0 572 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 RNF25Q96BH1 459 aaPredicted RBP13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 ANKRD36BP1Q96IX9 119 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 RNF19AQ9NV58 838 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 BRWD3Q6RI45 1802 aa13.35□□□□□ -0.27
SMARCA4-208ENST00000585799 MYH4Q9Y623 1939 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 GLI1P08151 1106 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 AADACL2Q6P093 401 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 RDM1Q8NG50 284 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 C1orf54Q8WWF1 131 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 ADPGKQ9BRR6 497 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 MAST2Q6P0Q8 1798 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 H0YHG0 523 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 KCNA2P16389 499 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 SCP2P22307 547 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 MARSP56192 900 aaKnown RBP13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 GTF2BQ00403 316 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 SGO2Q562F6 1265 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 SH2D3CQ8N5H7 860 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 FAM167AQ96KS9 214 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 PNMA3Q9UL41 463 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 SNCAIPQ9Y6H5 919 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 MYH10P35580 1976 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 PI4K2BG5E9Z4 385 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 RTN2O75298 545 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 LDHAP00338 332 aaKnown RBP13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 TMEM253P0C7T8 217 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 SLCO1A2P46721 670 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 DR1Q01658 176 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 SNAPC2Q13487 334 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 ZNF699Q32M78 642 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 SCYL2Q6P3W7 929 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 C7orf31Q8N865 590 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 USP38Q8NB14 1042 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 SEMA4DQ92854 862 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 RAB17Q9H0T7 212 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 PDGFCQ9NRA1 345 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 AFG3L2Q9Y4W6 797 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 LY75O60449 1722 aa13.34□□□□□ -0.27
SMARCA4-208ENST00000585799 ADAMTSL1Q8N6G6 1762 aa13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 GTPBP10A4D1E9 387 aaKnown RBP13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 ANKRD65E5RJM6 399 aa13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 ZNF131P52739 623 aa13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 YARSP54577 528 aaKnown RBP13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 NOP14P78316 857 aaKnown RBP13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 SP2Q02086 613 aa13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 WDR72Q3MJ13 1102 aa13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 HSDL1Q3SXM5 330 aa13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 RNF187Q5TA31 235 aaPredicted RBP13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 MEI1Q5TIA1 1274 aa13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 NOP9Q86U38 636 aaKnown RBP13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 OR2W6PQ8NHA6 318 aa13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.33□□□□□ -0.272e-6■■□□□ 12.8
SMARCA4-208ENST00000585799 MTMR12Q9C0I1 747 aa13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 KIAA1586Q9HCI6 787 aa13.33□□□□□ -0.27
SMARCA4-208ENST00000585799 LAMB1P07942 1786 aa13.33□□□□□ -0.28
SMARCA4-208ENST00000585799 DYNC1LI2O43237 492 aaPredicted RBP13.33□□□□□ -0.28
SMARCA4-208ENST00000585799 EXTL3O43909 919 aa13.33□□□□□ -0.28
SMARCA4-208ENST00000585799 NEFHP12036 1026 aa13.33□□□□□ -0.28
SMARCA4-208ENST00000585799 MAP4K3Q8IVH8 894 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms