RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 MCM6Q14566 821 aa16.68■□□□□ 0.26
CLIP3-202ENST00000585466 DCAF4L1Q3SXM0 396 aa16.68■□□□□ 0.26
CLIP3-202ENST00000585466 SPECC1Q5M775 1068 aa16.68■□□□□ 0.26
CLIP3-202ENST00000585466 LLGL2Q6P1M3 1020 aa16.68■□□□□ 0.26
CLIP3-202ENST00000585466 GJD3Q8N144 294 aa16.68■□□□□ 0.26
CLIP3-202ENST00000585466 CDK5RAP3Q96JB5 506 aa16.68■□□□□ 0.26
CLIP3-202ENST00000585466 FAM193BQ96PV7 902 aaPredicted RBP16.68■□□□□ 0.26
CLIP3-202ENST00000585466 FIZ1Q96SL8 496 aa16.68■□□□□ 0.26
CLIP3-202ENST00000585466 REEP2Q9BRK0 252 aa16.68■□□□□ 0.26
CLIP3-202ENST00000585466 HERC2P3Q9BVR0 1158 aa16.68■□□□□ 0.26
CLIP3-202ENST00000585466 TARS2Q9BW92 718 aaKnown RBP16.68■□□□□ 0.26
CLIP3-202ENST00000585466 RBM19Q9Y4C8 960 aaKnown RBP16.68■□□□□ 0.26
CLIP3-202ENST00000585466 IGFBP6P24592 240 aaPredicted RBP16.67■□□□□ 0.26
CLIP3-202ENST00000585466 OR1G1P47890 313 aa16.67■□□□□ 0.26
CLIP3-202ENST00000585466 NASPP49321 788 aaPredicted RBP16.67■□□□□ 0.26
CLIP3-202ENST00000585466 NCKAP1LP55160 1127 aa16.67■□□□□ 0.26
CLIP3-202ENST00000585466 SLC39A14Q15043 492 aa16.67■□□□□ 0.26
CLIP3-202ENST00000585466 XKR4Q5GH76 650 aa16.67■□□□□ 0.26
CLIP3-202ENST00000585466 KIAA0319Q5VV43 1072 aa16.67■□□□□ 0.26
CLIP3-202ENST00000585466 GPBP1Q86WP2 473 aa16.67■□□□□ 0.26
CLIP3-202ENST00000585466 RABGGTAQ92696 567 aa16.67■□□□□ 0.26
CLIP3-202ENST00000585466 CALML4Q96GE6 196 aa16.67■□□□□ 0.26
CLIP3-202ENST00000585466 GPR62Q9BZJ7 368 aa16.67■□□□□ 0.26
CLIP3-202ENST00000585466 EPHX3Q9H6B9 360 aa16.67■□□□□ 0.26
CLIP3-202ENST00000585466 CDH22Q9UJ99 828 aa16.67■□□□□ 0.26
CLIP3-202ENST00000585466 FAM50BQ9Y247 325 aa16.67■□□□□ 0.26
CLIP3-202ENST00000585466 DENND4AQ7Z401 1863 aa16.67■□□□□ 0.26
CLIP3-202ENST00000585466 C2orf16Q68DN1 1984 aa16.66■□□□□ 0.26
CLIP3-202ENST00000585466 A0A087X0B3 334 aa16.66■□□□□ 0.26
CLIP3-202ENST00000585466 CNPP09543 421 aaKnown RBP16.66■□□□□ 0.26
CLIP3-202ENST00000585466 EPCAMP16422 314 aa16.66■□□□□ 0.26
CLIP3-202ENST00000585466 GRM5P41594 1212 aa16.66■□□□□ 0.26
CLIP3-202ENST00000585466 GIT2Q14161 759 aa16.66■□□□□ 0.26
CLIP3-202ENST00000585466 ALKAL1Q6UXT8 129 aa16.66■□□□□ 0.26
CLIP3-202ENST00000585466 ZBTB45Q96K62 511 aaPredicted RBP16.66■□□□□ 0.26
CLIP3-202ENST00000585466 KLHL5Q96PQ7 755 aa16.66■□□□□ 0.26
CLIP3-202ENST00000585466 PPP1R10Q96QC0 940 aaKnown RBP16.66■□□□□ 0.26
CLIP3-202ENST00000585466 ADPGKQ9BRR6 497 aa16.66■□□□□ 0.26
CLIP3-202ENST00000585466 MRPL4Q9BYD3 311 aaKnown RBP16.66■□□□□ 0.26
CLIP3-202ENST00000585466 HAPLN2Q9GZV7 340 aa16.66■□□□□ 0.26
CLIP3-202ENST00000585466 ZSCAN16Q9H4T2 348 aaPredicted RBP16.66■□□□□ 0.26
CLIP3-202ENST00000585466 C11orf16Q9NQ32 467 aa16.66■□□□□ 0.26
CLIP3-202ENST00000585466 CHST7Q9NS84 486 aa16.66■□□□□ 0.26
CLIP3-202ENST00000585466 ODF2LQ9ULJ1 636 aa16.66■□□□□ 0.26
CLIP3-202ENST00000585466 GDAQ9Y2T3 454 aa16.66■□□□□ 0.26
CLIP3-202ENST00000585466 DSG1Q02413 1049 aa16.65■□□□□ 0.26
CLIP3-202ENST00000585466 CEBPZQ03701 1054 aaKnown RBP16.65■□□□□ 0.26
CLIP3-202ENST00000585466 TUSC3Q13454 348 aa16.65■□□□□ 0.26
CLIP3-202ENST00000585466 FUT10Q6P4F1 479 aa16.65■□□□□ 0.26
CLIP3-202ENST00000585466 CD300LGQ6UXG3 332 aa16.65■□□□□ 0.26
CLIP3-202ENST00000585466 LARP4BQ92615 738 aaKnown RBP16.65■□□□□ 0.26
CLIP3-202ENST00000585466 CASP10Q92851 521 aa16.65■□□□□ 0.26
CLIP3-202ENST00000585466 B3GALT6Q96L58 329 aa16.65■□□□□ 0.26
CLIP3-202ENST00000585466 RPS6KC1Q96S38 1066 aa16.65■□□□□ 0.26
CLIP3-202ENST00000585466 DAXXQ9UER7 740 aaPredicted RBP16.65■□□□□ 0.26
CLIP3-202ENST00000585466 STK39Q9UEW8 545 aa16.65■□□□□ 0.26
CLIP3-202ENST00000585466 MTCL1Q9Y4B5 1905 aaKnown RBP16.64■□□□□ 0.26
CLIP3-202ENST00000585466 CASTOR2A6NHX0 329 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 LOC730098B7Z3J9 87 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 PI4K2BG5E9Z4 385 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 KIF4AO95239 1232 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 MCF2P10911 925 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 HOXB8P17481 243 aaPredicted RBP16.64■□□□□ 0.25
CLIP3-202ENST00000585466 CLCN4P51793 760 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 SOX4Q06945 474 aaPredicted RBP16.64■□□□□ 0.25
CLIP3-202ENST00000585466 PKP1Q13835 747 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 DHX8Q14562 1220 aaKnown RBP16.64■□□□□ 0.25
CLIP3-202ENST00000585466 HSP90AA2PQ14568 343 aaPredicted RBP16.64■□□□□ 0.25
CLIP3-202ENST00000585466 CBX2Q14781 532 aaPredicted RBP16.64■□□□□ 0.25
CLIP3-202ENST00000585466 TMEM132AQ24JP5 1023 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 ZNF568Q3ZCX4 644 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 GLRA4Q5JXX5 417 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 KANK3Q6NY19 840 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 MPZL3Q6UWV2 235 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 HSCBQ8IWL3 235 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 LINC00301Q8NCQ3 95 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 ZMAT2Q96NC0 199 aaKnown RBP16.64■□□□□ 0.25
CLIP3-202ENST00000585466 COLEC11Q9BWP8 271 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 RXFP1Q9HBX9 757 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 ADAM28Q9UKQ2 775 aa16.64■□□□□ 0.25
CLIP3-202ENST00000585466 FAM189A1O60320 539 aa16.63■□□□□ 0.25
CLIP3-202ENST00000585466 THP07101 528 aa16.63■□□□□ 0.25
CLIP3-202ENST00000585466 DDIT3P35638 169 aa16.63■□□□□ 0.25
CLIP3-202ENST00000585466 GLUD2P49448 558 aa16.63■□□□□ 0.25
CLIP3-202ENST00000585466 ZPBP2Q6X784 338 aa16.63■□□□□ 0.25
CLIP3-202ENST00000585466 HAUS6Q7Z4H7 955 aa16.63■□□□□ 0.25
CLIP3-202ENST00000585466 ZBTB33Q86T24 672 aa16.63■□□□□ 0.25
CLIP3-202ENST00000585466 SNX27Q96L92 541 aa16.63■□□□□ 0.25
CLIP3-202ENST00000585466 APOL5Q9BWW9 433 aa16.63■□□□□ 0.25
CLIP3-202ENST00000585466 LARSQ9P2J5 1176 aaKnown RBP16.63■□□□□ 0.25
CLIP3-202ENST00000585466 TRIOO75962 3097 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 SMIM28A0A1B0GU29 152 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 TEX28O15482 410 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 TOM1L1O75674 476 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 PIGRP01833 764 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 URODP06132 367 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 SRGAP2BP0DMP2 458 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 SSTR3P32745 418 aaPredicted RBP16.62■□□□□ 0.25
CLIP3-202ENST00000585466 CA8P35219 290 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 SMTNP53814 917 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms