RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	KMT5A	Q9NQR1	393 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	STARD7	Q9NQZ5	370 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	GJB4	Q9NTQ9	266 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	SCRIB	Q14160	1630 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	HGS	O14964	777 aa	Predicted RBP	5.8	□□□□□ -1.48
SS18-223	ENST00000583595	ADAMTS3	O15072	1205 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	SNX2	O60749	519 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	FGF18	O76093	207 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	PFKM	P08237	780 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	GJA4	P35212	333 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	DDIT3	P35638	169 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	RGS3	P49796	1198 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	FOXO4	P98177	505 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	MALL	Q13021	153 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	TBX2	Q13207	712 aa	Predicted RBP	5.8	□□□□□ -1.48
SS18-223	ENST00000583595	G3BP1	Q13283	466 aa	Known RBP eCLIP	5.8	□□□□□ -1.48
SS18-223	ENST00000583595	ADRM1	Q16186	407 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	HYI	Q5T013	277 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	KLHDC7A	Q5VTJ3	777 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	PRAMEF9	Q5VWM5	478 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	KANSL1	Q7Z3B3	1105 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	LINC01356	Q8N9X3	169 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	ZNF527	Q8NB42	609 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	TSPAN17	Q96FV3	270 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	CDK5RAP3	Q96JB5	506 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	WNT8A	Q9H1J5	351 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	UCKL1	Q9NWZ5	548 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	ASH2L	Q9UBL3	628 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	NUDT5	Q9UKK9	219 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	MAGED2	Q9UNF1	606 aa	Predicted RBP	5.8	□□□□□ -1.48
SS18-223	ENST00000583595	SIT1	Q9Y3P8	196 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595	LRRFIP2	Q9Y608	721 aa	Known RBP	5.8	□□□□□ -1.48
SS18-223	ENST00000583595	ADAMTS20	P59510	1910 aa		5.8	□□□□□ -1.48
SS18-223	ENST00000583595		H3BUI4	141 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595		J3KRW8	73 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	EYA2	O00167	538 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	RNASEH2A	O75792	299 aa	Known RBP	5.79	□□□□□ -1.48
SS18-223	ENST00000583595	KIT	P10721	976 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	HARS	P12081	509 aa	Known RBP	5.79	□□□□□ -1.48
SS18-223	ENST00000583595	MC3R	P41968	323 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	WAS	P42768	502 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	MCAM	P43121	646 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	RAB1A	P62820	205 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	FMO1	Q01740	532 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	ICA1	Q05084	483 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	BLMH	Q13867	455 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	SPIDR	Q14159	915 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	FGL2	Q14314	439 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	NOLC1	Q14978	699 aa	Known RBP eCLIP	5.79	□□□□□ -1.48
SS18-223	ENST00000583595	GLIPR1L2	Q4G1C9	344 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	PRR16	Q569H4	304 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	KIAA1841	Q6NSI8	718 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	PGBD2	Q6P3X8	592 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	CYP26C1	Q6V0L0	522 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	SH2D3C	Q8N5H7	860 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	CCDC33	Q8N5R6	958 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	CCDC89	Q8N998	374 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	TP53I13	Q8NBR0	393 aa	Predicted RBP	5.79	□□□□□ -1.48
SS18-223	ENST00000583595	IL31RA	Q8NI17	732 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	ANKS1A	Q92625	1134 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	HDAC10	Q969S8	669 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	RGMA	Q96B86	450 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	UBXN10	Q96LJ8	280 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	TTLL2	Q9BWV7	592 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	KRTAP4-5	Q9BYR2	181 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	BTBD1	Q9H0C5	482 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	MYOT	Q9UBF9	498 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	GRHPR	Q9UBQ7	328 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	EVL	Q9UI08	416 aa	Predicted RBP	5.79	□□□□□ -1.48
SS18-223	ENST00000583595	NUB1	Q9Y5A7	615 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	PCDHA3	Q9Y5H8	950 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	CDY2A	Q9Y6F7	541 aa		5.79	□□□□□ -1.48
SS18-223	ENST00000583595	CECR2	Q9BXF3	1484 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	ST20-MTHFS	A0A0A6YYL1	179 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595		A0A0G2JLL6	359 aa	Predicted RBP	5.78	□□□□□ -1.48
SS18-223	ENST00000583595	FFAR3	O14843	346 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	PRL	P01236	227 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	CSTB	P04080	98 aa	Known RBP	5.78	□□□□□ -1.48
SS18-223	ENST00000583595	TSHR	P16473	764 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	PDIA3	P30101	505 aa	Known RBP	5.78	□□□□□ -1.48
SS18-223	ENST00000583595	HSPA7	P48741	367 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	NKX6-1	P78426	367 aa	Predicted RBP	5.78	□□□□□ -1.48
SS18-223	ENST00000583595	SET	Q01105	290 aa	Predicted RBP	5.78	□□□□□ -1.48
SS18-223	ENST00000583595	PPARA	Q07869	468 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	PPP3CA	Q08209	521 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	STARD3	Q14849	445 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	MUM1L1	Q5H9M0	696 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	EMC4	Q5J8M3	183 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	GAREM2	Q75VX8	874 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	SESTD1	Q86VW0	696 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	RNF152	Q8N8N0	203 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	SYT8	Q8NBV8	401 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	C1orf131	Q8NDD1	294 aa	Known RBP	5.78	□□□□□ -1.48
SS18-223	ENST00000583595	NGDN	Q8NEJ9	315 aa	Known RBP	5.78	□□□□□ -1.48
SS18-223	ENST00000583595	OR14C36	Q8NHC7	312 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	FEZF2	Q8TBJ5	459 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	FNIP1	Q8TF40	1166 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	BRI3BP	Q8WY22	251 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	RAB24	Q969Q5	203 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	TMEM41A	Q96HV5	264 aa		5.78	□□□□□ -1.48

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