RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 UNC45AQ9H3U1 944 aa11.15□□□□□ -0.62
SS18-207ENST00000577636 MFSD1Q9H3U5 465 aa11.15□□□□□ -0.62
SS18-207ENST00000577636 ZHX3Q9H4I2 956 aa11.15□□□□□ -0.62
SS18-207ENST00000577636 ZSWIM4Q9H7M6 989 aa11.15□□□□□ -0.62
SS18-207ENST00000577636 NGRNQ9NPE2 291 aaKnown RBP11.15□□□□□ -0.62
SS18-207ENST00000577636 KCND2Q9NZV8 630 aa11.15□□□□□ -0.62
SS18-207ENST00000577636 GDAQ9Y2T3 454 aa11.15□□□□□ -0.62
SS18-207ENST00000577636 USP34Q70CQ2 3546 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 ARHGEF35A5YM69 484 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 WDR64B1ANS9 1081 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 VTNP04004 478 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 ASGR2P07307 311 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 SPATA31C1P0DKV0 1188 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 CD44P16070 742 aaKnown RBP11.14□□□□□ -0.63
SS18-207ENST00000577636 GAP43P17677 238 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 PLCB3Q01970 1234 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 MTMR3Q13615 1198 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 KCNC3Q14003 757 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 CTTNQ14247 550 aaKnown RBP11.14□□□□□ -0.63
SS18-207ENST00000577636 ECM1Q16610 540 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 FAM26FQ5R3K3 315 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 RARS2Q5T160 578 aaKnown RBP11.14□□□□□ -0.63
SS18-207ENST00000577636 FAM160B1Q5W0V3 765 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 ZNF746Q6NUN9 644 aaPredicted RBP11.14□□□□□ -0.63
SS18-207ENST00000577636 SWSAP1Q6NVH7 229 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 KCNT2Q6UVM3 1135 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 TMEM184AQ6ZMB5 413 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 LRRC55Q6ZSA7 311 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 STXBP4Q6ZWJ1 553 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 KCNK18Q7Z418 384 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 FAM228AQ86W67 206 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 SMAP1Q8IYB5 467 aaPredicted RBP11.14□□□□□ -0.63
SS18-207ENST00000577636 GUF1Q8N442 669 aaKnown RBP11.14□□□□□ -0.63
SS18-207ENST00000577636 C12orf76Q8N812 135 aaPredicted RBP11.14□□□□□ -0.63
SS18-207ENST00000577636 FLCNQ8NFG4 579 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 CASP10Q92851 521 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 ZNF668Q96K58 619 aaPredicted RBP11.14□□□□□ -0.63
SS18-207ENST00000577636 ZNF558Q96NG5 402 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 BHMT2Q9H2M3 363 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 POMKQ9H5K3 350 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 SLC39A2Q9NP94 309 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 TMEM161AQ9NX61 479 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 LIMD1Q9UGP4 676 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 SORCS3Q9UPU3 1222 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 MAPK8IP1Q9UQF2 711 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 COL4A3BPQ9Y5P4 624 aa11.14□□□□□ -0.63
SS18-207ENST00000577636 NFASCO94856 1347 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 PLXNA4Q9HCM2 1894 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 NT5C1B-RDH14C9J2C7 533 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 EML1O00423 815 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 SLITRK3O94933 977 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 CXCL14O95715 111 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 PSAPP07602 524 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 ATP1A3P13637 1013 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 ZNF18P17022 549 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 ZSCAN20P17040 1043 aaPredicted RBP11.13□□□□□ -0.63
SS18-207ENST00000577636 HOXB8P17481 243 aaPredicted RBP11.13□□□□□ -0.63
SS18-207ENST00000577636 CYP11B2P19099 503 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 CCNE1P24864 410 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 EEF1GP26641 437 aaKnown RBP11.13□□□□□ -0.63
SS18-207ENST00000577636 QARSP47897 775 aaKnown RBP11.13□□□□□ -0.63
SS18-207ENST00000577636 CRYBB1P53674 252 aaPredicted RBP11.13□□□□□ -0.63
SS18-207ENST00000577636 SLC12A3P55017 1021 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 LRRC63Q05C16 580 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 STK4Q13043 487 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 ITGB3BPQ13352 177 aaPredicted RBP11.13□□□□□ -0.63
SS18-207ENST00000577636 FRMD5Q7Z6J6 570 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 UBALD2Q8IYN6 164 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 CSGALNACT2Q8N6G5 542 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 LRRC15Q8TF66 581 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 CASD1Q96PB1 797 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 LXNQ9BS40 222 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 TMEM117Q9H0C3 514 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 THAP9Q9H5L6 903 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 ZNF302Q9NR11 478 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 SAMSN1Q9NSI8 373 aaKnown RBP11.13□□□□□ -0.63
SS18-207ENST00000577636 SPG21Q9NZD8 308 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 RGL1Q9NZL6 768 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 DBR1Q9UK59 544 aaKnown RBP11.13□□□□□ -0.63
SS18-207ENST00000577636 LZTS1Q9Y250 596 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 ZKSCAN5Q9Y2L8 839 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 HCFC2Q9Y5Z7 792 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 KIAA1671Q9BY89 1806 aa11.13□□□□□ -0.63
SS18-207ENST00000577636 ZDBF2Q9HCK1 2354 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 PRR23AA6NEV1 266 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 DHX15O43143 795 aaKnown RBP11.12□□□□□ -0.63
SS18-207ENST00000577636 CLASP2O75122 1294 aaKnown RBP11.12□□□□□ -0.63
SS18-207ENST00000577636 FAM13AO94988 1023 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 ATG7O95352 703 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 CCNE2O96020 404 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 TPM1P09493 284 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 SLC26A2P50443 739 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 NUBP1P53384 320 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 PSMC5P62195 406 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 FAM189BP81408 668 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 FOXK2Q01167 660 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 SMC1AQ14683 1233 aaKnown RBP11.12□□□□□ -0.63
SS18-207ENST00000577636 HSP90AA4PQ58FG1 418 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 ZNF484Q5JVG2 852 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 CDKAL1Q5VV42 579 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms