RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 MARCH5Q9NX47 278 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 PARP2Q9UGN5 583 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 N4BP3O15049 544 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 CYP11B2P19099 503 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 NAMPTP43490 491 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 FXR2P51116 673 aaKnown RBP eCLIP15.13■□□□□ 0.01
CCDC40-216ENST00000576241 GRIK3Q13003 919 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 PRPF4BQ13523 1007 aaKnown RBP15.13■□□□□ 0.01
CCDC40-216ENST00000576241 PPP2R5AQ15172 486 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 FAM187BQ17R55 369 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 KANK3Q6NY19 840 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 PLCD3Q8N3E9 789 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 RAB34Q9BZG1 259 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 MIOSQ9NXC5 875 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 KLK14Q9P0G3 267 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 LRWD1Q9UFC0 647 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 DPP7Q9UHL4 492 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 SORCS3Q9UPU3 1222 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 KIF3AQ9Y496 699 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 STK24Q9Y6E0 443 aa15.13■□□□□ 0.01
CCDC40-216ENST00000576241 LILRB3O75022 631 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 PRKCBP05771 671 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 LIG1P18858 919 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 CLCN5P51795 746 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 C15orf39Q6ZRI6 1047 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 CCDC149Q6ZUS6 474 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 TAS1R1Q7RTX1 841 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 GPR149Q86SP6 731 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 ZDHHC14Q8IZN3 488 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 IFT74Q96LB3 600 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 KIF2CQ99661 725 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 ADPGKQ9BRR6 497 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 MFSD1Q9H3U5 465 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 FZD8Q9H461 694 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 DLL3Q9NYJ7 618 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 USTQ9Y2C2 406 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 ATRXP46100 2492 aa15.12■□□□□ 0.01
CCDC40-216ENST00000576241 FRYLO94915 3013 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 F8W810 466 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 TEX28O15482 410 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 GLUD1P00367 558 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 LMNAP02545 664 aaKnown RBP15.11■□□□□ 0.01
CCDC40-216ENST00000576241 U2AF2P26368 475 aaKnown RBP eCLIP15.11■□□□□ 0.01
CCDC40-216ENST00000576241 EFNA5P52803 228 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 DSG1Q02413 1049 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 NBR1Q14596 966 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 USP41Q3LFD5 358 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 C8orf34Q49A92 452 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 RNF168Q8IYW5 571 aaPredicted RBP15.11■□□□□ 0.01
CCDC40-216ENST00000576241 GSTCDQ8NEC7 633 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 SNX29Q8TEQ0 813 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 BSNDQ8WZ55 320 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 KIFAP3Q92845 792 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 ACSF2Q96CM8 615 aaPredicted RBP15.11■□□□□ 0.01
CCDC40-216ENST00000576241 BHMT2Q9H2M3 363 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 PDZD7Q9H5P4 517 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 MAN1C1Q9NR34 630 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.11■□□□□ 0.01
CCDC40-216ENST00000576241 ADAM28Q9UKQ2 775 aa15.11■□□□□ 0.01
CCDC40-216ENST00000576241 LAD1O00515 517 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 ACKR2O00590 384 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 TADA2AO75478 443 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 EFEMP2O95967 443 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 CREMQ03060 361 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 PTGDRQ13258 359 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 PDIA5Q14554 519 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 RABEP1Q15276 862 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 ANGPT1Q15389 498 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 ST3GAL2Q16842 350 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 KIAA0319Q5VV43 1072 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 FUT10Q6P4F1 479 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 OTOP3Q7RTS5 596 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 CCDC113Q9H0I3 377 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 RXFP1Q9HBX9 757 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 DDX19AQ9NUU7 478 aaKnown RBP15.1■□□□□ 0.01
CCDC40-216ENST00000576241 DAXXQ9UER7 740 aaPredicted RBP15.1■□□□□ 0.01
CCDC40-216ENST00000576241 LIMD1Q9UGP4 676 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 KIAA1024Q9UPX6 916 aa15.1■□□□□ 0.01
CCDC40-216ENST00000576241 SF3B1O75533 1304 aaKnown RBP eCLIP15.1■□□□□ 0.01
CCDC40-216ENST00000576241 OTOGLQ3ZCN5 2332 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 TTLL13PA6NNM8 815 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 PI15O43692 258 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 ASGR2P07307 311 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 TUSC3Q13454 348 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 HSP90AA2PQ14568 343 aaPredicted RBP15.09■□□□□ 0.01
CCDC40-216ENST00000576241 DCAF4L1Q3SXM0 396 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 KRT79Q5XKE5 535 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 CWF19L1Q69YN2 538 aaKnown RBP15.09■□□□□ 0.01
CCDC40-216ENST00000576241 CYP26C1Q6V0L0 522 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 APBB1IPQ7Z5R6 666 aaPredicted RBP15.09■□□□□ 0.01
CCDC40-216ENST00000576241 GPR65Q8IYL9 337 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 C4orf32Q8N8J7 132 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 FLCNQ8NFG4 579 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 CMASQ8NFW8 434 aaPredicted RBP15.09■□□□□ 0.01
CCDC40-216ENST00000576241 RIN2Q8WYP3 895 aaPredicted RBP15.09■□□□□ 0.01
CCDC40-216ENST00000576241 RABGGTAQ92696 567 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 GPR62Q9BZJ7 368 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 CHST7Q9NS84 486 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 SNTG2Q9NY99 539 aa15.09■□□□□ 0.01
CCDC40-216ENST00000576241 DNM3Q9UQ16 869 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms