RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 LGR4Q9BXB1 951 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 CRNKL1Q9BZJ0 848 aaKnown RBP7.64□□□□□ -1.19
VPS53-217ENST00000575100 TDRD3Q9H7E2 651 aaKnown RBP7.64□□□□□ -1.19
VPS53-217ENST00000575100 CERS4Q9HA82 394 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 WASH6PQ9NQA3 447 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 SAMD15Q9P1V8 674 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.64□□□□□ -1.19
VPS53-217ENST00000575100 ZMYM6O95789 1325 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 FLT1P17948 1338 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 NEDD4P46934 1319 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 DDX60LQ5H9U9 1706 aaKnown RBP7.63□□□□□ -1.19
VPS53-217ENST00000575100 SLC22A31A6NKX4 558 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 ARHGAP33O14559 1287 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 ZNF213O14771 459 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 TBX1O43435 398 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 DKC1O60832 514 aaKnown RBP eCLIP7.63□□□□□ -1.19
VPS53-217ENST00000575100 BAG3O95817 575 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 NAT2P11245 290 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 PEX2P28328 305 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 KIF5BP33176 963 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 ANP32AP39687 249 aaKnown RBP7.63□□□□□ -1.19
VPS53-217ENST00000575100 PLCD1P51178 756 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 IZUMO3Q5VZ72 239 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 NUGGCQ68CJ6 796 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 LLGL2Q6P1M3 1020 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 NCAPG2Q86XI2 1143 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 TEX11Q8IYF3 940 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 PPP1R35Q8TAP8 253 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 ASB12Q8WXK4 309 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 IWS1Q96ST2 819 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 C11orf16Q9NQ32 467 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 USP40Q9NVE5 1235 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 MCM9Q9NXL9 1143 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 ZDHHC3Q9NYG2 299 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 EPS15L1Q9UBC2 864 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 L1RE1Q9UN81 338 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 TRIM17Q9Y577 477 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 LAMA4Q16363 1823 aa7.63□□□□□ -1.19
VPS53-217ENST00000575100 CLRN2A0PK11 232 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 P4HA2O15460 535 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 MYO1BO43795 1136 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 USP2O75604 605 aaPredicted RBP7.62□□□□□ -1.19
VPS53-217ENST00000575100 TPM2P07951 284 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 ACPPP15309 386 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 ATF7P17544 494 aaPredicted RBP7.62□□□□□ -1.19
VPS53-217ENST00000575100 MUTP22033 750 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 NME2P22392 152 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 CASP5P51878 434 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 PPARAQ07869 468 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 RABEP1Q15276 862 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 IMMTQ16891 758 aaKnown RBP7.62□□□□□ -1.19
VPS53-217ENST00000575100 ANO4Q32M45 955 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 TTC31Q49AM3 519 aaPredicted RBP7.62□□□□□ -1.19
VPS53-217ENST00000575100 DARS2Q6PI48 645 aaKnown RBP7.62□□□□□ -1.19
VPS53-217ENST00000575100 CCDC116Q8IYX3 515 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 LRRN4CLQ8ND94 238 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 OR13H1Q8NG92 308 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 ZSCAN10Q96SZ4 725 aaPredicted RBP7.62□□□□□ -1.19
VPS53-217ENST00000575100 MRIQ9BWK5 157 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 LRRC2Q9BYS8 371 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 BHLHE41Q9C0J9 482 aaPredicted RBP7.62□□□□□ -1.19
VPS53-217ENST00000575100 APEX2Q9UBZ4 518 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 FZD1Q9UP38 647 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 KIAA0100Q14667 2235 aaKnown RBP7.62□□□□□ -1.19
VPS53-217ENST00000575100 A0A096LPE4 126 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 A0A1W2PPZ6 126 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 CPLX1O14810 134 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 SNPHO15079 494 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 DLX3O60479 287 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 DTNBO60941 627 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 H2AFYO75367 372 aaKnown RBP7.62□□□□□ -1.19
VPS53-217ENST00000575100 PRDM1O75626 825 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 CSTBP04080 98 aaKnown RBP7.62□□□□□ -1.19
VPS53-217ENST00000575100 ATP1A3P13637 1013 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 POLR2BP30876 1174 aaKnown RBP7.62□□□□□ -1.19
VPS53-217ENST00000575100 SSR1P43307 286 aaKnown RBP7.62□□□□□ -1.19
VPS53-217ENST00000575100 ANTXR2P58335 489 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 TCP10Q12799 353 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 CRHR2Q13324 411 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 LRRC14Q15048 493 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 PTPN14Q15678 1187 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 NBPF12Q5TAG4 269 aaPredicted RBP7.62□□□□□ -1.19
VPS53-217ENST00000575100 OTUD7BQ6GQQ9 843 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 RFX8Q6ZV50 586 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 RUFY3Q7L099 469 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 SLC44A5Q8NCS7 719 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 DYNLL2Q96FJ2 89 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 HIC2Q96JB3 615 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 NEK1Q96PY6 1258 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 HHIPQ96QV1 700 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 NACAP1Q9BZK3 213 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 ARGLU1Q9NWB6 273 aaPredicted RBP7.62□□□□□ -1.19
VPS53-217ENST00000575100 CTNNA3Q9UI47 895 aa7.62□□□□□ -1.19
VPS53-217ENST00000575100 FOCADQ5VW36 1801 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 NAV1Q8NEY1 1877 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 F5H0A9 414 aaPredicted RBP7.61□□□□□ -1.19
VPS53-217ENST00000575100 NCK2O43639 380 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 GAS7O60861 476 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 CRTAMO95727 393 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 EPHX1P07099 455 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms