RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TADA2AO75478 443 aa23.32■■□□□ 1.32
VPS53-216ENST00000574029 FOSBP53539 338 aa23.32■■□□□ 1.32
VPS53-216ENST00000574029 TUSC3Q13454 348 aa23.32■■□□□ 1.32
VPS53-216ENST00000574029 HSP90AA2PQ14568 343 aaPredicted RBP23.32■■□□□ 1.32
VPS53-216ENST00000574029 CCDC105Q8IYK2 499 aa23.32■■□□□ 1.32
VPS53-216ENST00000574029 NXPE3Q969Y0 559 aa23.32■■□□□ 1.32
VPS53-216ENST00000574029 PRKD2Q9BZL6 878 aa23.32■■□□□ 1.32
VPS53-216ENST00000574029 PIDD1Q9HB75 910 aa23.32■■□□□ 1.32
VPS53-216ENST00000574029 DOCK8Q8NF50 2099 aa23.32■■□□□ 1.32
VPS53-216ENST00000574029 PRR23AA6NEV1 266 aa23.31■■□□□ 1.32
VPS53-216ENST00000574029 ATP2B1P20020 1258 aa23.31■■□□□ 1.32
VPS53-216ENST00000574029 MCM7P33993 719 aa23.31■■□□□ 1.32
VPS53-216ENST00000574029 ST3GAL1Q11201 340 aa23.31■■□□□ 1.32
VPS53-216ENST00000574029 GLYCTKQ8IVS8 523 aa23.31■■□□□ 1.32
VPS53-216ENST00000574029 ZBTB8OSQ8IWT0 167 aa23.31■■□□□ 1.32
VPS53-216ENST00000574029 SLC44A3Q8N4M1 653 aa23.31■■□□□ 1.32
VPS53-216ENST00000574029 NACC1Q96RE7 527 aa23.31■■□□□ 1.32
VPS53-216ENST00000574029 PAAF1Q9BRP4 392 aa23.31■■□□□ 1.32
VPS53-216ENST00000574029 POLR3CQ9BUI4 534 aaPredicted RBP23.31■■□□□ 1.32
VPS53-216ENST00000574029 PDZD7Q9H5P4 517 aa23.31■■□□□ 1.32
VPS53-216ENST00000574029 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.31■■□□□ 1.32
VPS53-216ENST00000574029 CACNG4Q9UBN1 327 aa23.31■■□□□ 1.32
VPS53-216ENST00000574029 SF3B1O75533 1304 aaKnown RBP eCLIP23.31■■□□□ 1.321e-10■■■■■ 107
VPS53-216ENST00000574029 TTLL13PA6NNM8 815 aa23.3■■□□□ 1.32
VPS53-216ENST00000574029 N4BP3O15049 544 aa23.3■■□□□ 1.32
VPS53-216ENST00000574029 CFHP08603 1231 aa23.3■■□□□ 1.32
VPS53-216ENST00000574029 RPL17P18621 184 aaKnown RBP23.3■■□□□ 1.32
VPS53-216ENST00000574029 NEK4P51957 841 aa23.3■■□□□ 1.32
VPS53-216ENST00000574029 RTP2Q5QGT7 225 aa23.3■■□□□ 1.32
VPS53-216ENST00000574029 POTEGQ6S5H5 508 aa23.3■■□□□ 1.32
VPS53-216ENST00000574029 PRSS55Q6UWB4 352 aaPredicted RBP23.3■■□□□ 1.32
VPS53-216ENST00000574029 C2orf40Q9H1Z8 148 aa23.3■■□□□ 1.32
VPS53-216ENST00000574029 KRBA1A5PL33 1030 aa23.29■■□□□ 1.32
VPS53-216ENST00000574029 PTGESO14684 152 aa23.29■■□□□ 1.32
VPS53-216ENST00000574029 ZMYND10O75800 440 aa23.29■■□□□ 1.32
VPS53-216ENST00000574029 SRFP11831 508 aa23.29■■□□□ 1.32
VPS53-216ENST00000574029 LAMP2P13473 410 aa23.29■■□□□ 1.32
VPS53-216ENST00000574029 FRMD5Q7Z6J6 570 aa23.29■■□□□ 1.32
VPS53-216ENST00000574029 DTWD2Q8NBA8 298 aa23.29■■□□□ 1.32
VPS53-216ENST00000574029 BSNDQ8WZ55 320 aa23.29■■□□□ 1.32
VPS53-216ENST00000574029 SNTG2Q9NY99 539 aa23.29■■□□□ 1.32
VPS53-216ENST00000574029 CYP11B2P19099 503 aa23.28■■□□□ 1.32
VPS53-216ENST00000574029 RPA1P27694 616 aa23.28■■□□□ 1.32
VPS53-216ENST00000574029 PRPF4BQ13523 1007 aaKnown RBP23.28■■□□□ 1.32
VPS53-216ENST00000574029 NAB2Q15742 525 aa23.28■■□□□ 1.32
VPS53-216ENST00000574029 PADI6Q6TGC4 694 aa23.28■■□□□ 1.32
VPS53-216ENST00000574029 PIK3R5Q8WYR1 880 aa23.28■■□□□ 1.32
VPS53-216ENST00000574029 CLSTN3Q9BQT9 956 aa23.28■■□□□ 1.32
VPS53-216ENST00000574029 TTPALQ9BTX7 342 aa23.28■■□□□ 1.32
VPS53-216ENST00000574029 CCDC113Q9H0I3 377 aa23.28■■□□□ 1.32
VPS53-216ENST00000574029 FBXW11Q9UKB1 542 aa23.28■■□□□ 1.32
VPS53-216ENST00000574029 MYO15AQ9UKN7 3530 aa23.27■■□□□ 1.32
VPS53-216ENST00000574029 ZFHX2Q9C0A1 2572 aaPredicted RBP23.27■■□□□ 1.32
VPS53-216ENST00000574029 CASTOR2A6NHX0 329 aa23.27■■□□□ 1.32
VPS53-216ENST00000574029 ANHXE9PGG2 379 aa23.27■■□□□ 1.32
VPS53-216ENST00000574029 ACKR2O00590 384 aa23.27■■□□□ 1.32
VPS53-216ENST00000574029 RECQL4O94761 1208 aa23.27■■□□□ 1.32
VPS53-216ENST00000574029 KIF4AO95239 1232 aa23.27■■□□□ 1.32
VPS53-216ENST00000574029 THP07101 528 aa23.27■■□□□ 1.32
VPS53-216ENST00000574029 NAMPTP43490 491 aa23.27■■□□□ 1.32
VPS53-216ENST00000574029 ORC2Q13416 577 aaPredicted RBP23.27■■□□□ 1.32
VPS53-216ENST00000574029 ANGPT1Q15389 498 aa23.27■■□□□ 1.32
VPS53-216ENST00000574029 SAFBQ15424 915 aaKnown RBP eCLIP23.27■■□□□ 1.32
VPS53-216ENST00000574029 MAPK6Q16659 721 aa23.27■■□□□ 1.32
VPS53-216ENST00000574029 FAM171A1Q5VUB5 890 aa23.27■■□□□ 1.32
VPS53-216ENST00000574029 GET4Q7L5D6 327 aaPredicted RBP23.27■■□□□ 1.32
VPS53-216ENST00000574029 ERMNQ8TAM6 284 aa23.27■■□□□ 1.32
VPS53-216ENST00000574029 LNX1Q8TBB1 728 aaPredicted RBP23.27■■□□□ 1.32
VPS53-216ENST00000574029 HASPINQ8TF76 798 aa23.27■■□□□ 1.32
VPS53-216ENST00000574029 NKD2Q969F2 451 aaPredicted RBP23.27■■□□□ 1.32
VPS53-216ENST00000574029 CXCL16Q9H2A7 254 aa23.27■■□□□ 1.32
VPS53-216ENST00000574029 EDN1P05305 212 aa23.26■■□□□ 1.31
VPS53-216ENST00000574029 PRKCBP05771 671 aa23.26■■□□□ 1.31
VPS53-216ENST00000574029 OR52Z1P0C646 297 aa23.26■■□□□ 1.31
VPS53-216ENST00000574029 GUCY1B3Q02153 619 aa23.26■■□□□ 1.31
VPS53-216ENST00000574029 HTR4Q13639 388 aa23.26■■□□□ 1.31
VPS53-216ENST00000574029 NOSTRINQ8IVI9 506 aa23.26■■□□□ 1.31
VPS53-216ENST00000574029 VWA8A3KMH1 1905 aa23.25■■□□□ 1.31
VPS53-216ENST00000574029 ARHGEF35A5YM69 484 aa23.25■■□□□ 1.31
VPS53-216ENST00000574029 HNRNPA1P09651 372 aaKnown RBP eCLIP23.25■■□□□ 1.31
VPS53-216ENST00000574029 MUTP22033 750 aa23.25■■□□□ 1.31
VPS53-216ENST00000574029 PSMD5Q16401 504 aa23.25■■□□□ 1.31
VPS53-216ENST00000574029 CEP57Q86XR8 500 aa23.25■■□□□ 1.31
VPS53-216ENST00000574029 DEPTORQ8TB45 409 aa23.25■■□□□ 1.31
VPS53-216ENST00000574029 SNX27Q96L92 541 aa23.25■■□□□ 1.31
VPS53-216ENST00000574029 ADPGKQ9BRR6 497 aa23.25■■□□□ 1.31
VPS53-216ENST00000574029 DAXXQ9UER7 740 aaPredicted RBP23.25■■□□□ 1.31
VPS53-216ENST00000574029 CA14Q9ULX7 337 aa23.25■■□□□ 1.31
VPS53-216ENST00000574029 USP20Q9Y2K6 914 aa23.25■■□□□ 1.31
VPS53-216ENST00000574029 ZFP37Q9Y6Q3 630 aaPredicted RBP23.25■■□□□ 1.31
VPS53-216ENST00000574029 FSHRP23945 695 aa23.24■■□□□ 1.31
VPS53-216ENST00000574029 ELAVL2Q12926 359 aaKnown RBP23.24■■□□□ 1.31
VPS53-216ENST00000574029 PPP2R5AQ15172 486 aa23.24■■□□□ 1.31
VPS53-216ENST00000574029 ZNF174Q15697 407 aa23.24■■□□□ 1.31
VPS53-216ENST00000574029 TMEM132AQ24JP5 1023 aa23.24■■□□□ 1.31
VPS53-216ENST00000574029 EEF1DP3Q658K8 133 aa23.24■■□□□ 1.31
VPS53-216ENST00000574029 PDXDC1Q6P996 788 aa23.24■■□□□ 1.31
VPS53-216ENST00000574029 GPR152Q8TDT2 470 aa23.24■■□□□ 1.31
VPS53-216ENST00000574029 FOXP1Q9H334 677 aaPredicted RBP23.24■■□□□ 1.31
VPS53-216ENST00000574029 SLC2A4RGQ9NR83 387 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms